Wall clock time and date at job start Thu Apr 9 2020 11:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48493 * 109.47128 * 270.00166 * 3 2 1 5 5 H 1.48500 * 109.47199 * 30.00299 * 3 2 1 6 6 H 1.48503 * 109.47057 * 149.99889 * 3 2 1 7 7 C 1.37878 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00458 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50701 * 60.07456 * 9 7 2 11 11 C 1.53123 * 109.50215 * 299.99742 * 9 7 2 12 12 C 1.53120 * 109.21163 * 182.33526 * 11 9 7 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 C 1.52994 * 109.47274 * 65.79158 * 15 14 13 17 17 C 1.53000 * 117.50007 * 243.62184 * 16 15 14 18 18 C 1.52998 * 60.00347 * 252.50917 * 17 16 15 19 19 C 1.46848 * 111.19518 * 61.74755 * 14 13 12 20 20 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.52319 * 302.27319 * 11 9 7 22 22 H 1.08995 * 109.52318 * 62.40000 * 11 9 7 23 23 H 1.09004 * 109.49930 * 177.63007 * 12 11 9 24 24 H 1.08997 * 109.50353 * 297.74224 * 12 11 9 25 25 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 26 26 H 1.09002 * 109.44150 * 60.87652 * 13 12 11 27 27 H 1.09007 * 109.47226 * 185.79563 * 15 14 13 28 28 H 1.09007 * 109.47336 * 305.79107 * 15 14 13 29 29 H 1.08998 * 115.55192 * 29.33227 * 16 15 14 30 30 H 1.09007 * 117.50095 * 0.02562 * 17 16 15 31 31 H 1.09004 * 117.50259 * 145.01848 * 17 16 15 32 32 H 1.08991 * 117.50113 * 252.51282 * 18 17 16 33 33 H 1.09002 * 117.50139 * 107.48555 * 18 17 16 34 34 H 1.09006 * 109.46097 * 178.23945 * 19 14 13 35 35 H 1.08996 * 109.46972 * 58.27256 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8751 -0.6822 0.8910 11 6 4.0232 -0.4716 -1.2493 12 6 5.5532 -0.5263 -1.2718 13 6 6.0057 -1.9893 -1.2394 14 7 5.4916 -2.6360 -0.0255 15 6 6.0202 -4.0000 0.1086 16 6 7.5324 -3.9411 0.3335 17 6 8.4307 -4.5641 -0.7370 18 6 8.2567 -5.2592 0.6147 19 6 4.0232 -2.6364 -0.0052 20 1 -0.4850 0.8400 0.0004 21 1 3.6280 -0.9601 -2.1400 22 1 3.6961 0.5679 -1.2285 23 1 5.9210 -0.0501 -2.1807 24 1 5.9489 -0.0039 -0.4009 25 1 7.0949 -2.0324 -1.2404 26 1 5.6209 -2.5076 -2.1178 27 1 5.5455 -4.4920 0.9576 28 1 5.8099 -4.5623 -0.8013 29 1 7.8979 -3.0480 0.8402 30 1 7.9443 -5.0155 -1.6019 31 1 9.3874 -4.0806 -0.9350 32 1 9.0988 -5.2331 1.3062 33 1 7.6558 -6.1683 0.6396 34 1 3.6725 -3.1494 0.8903 35 1 3.6479 -3.1517 -0.8893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306982815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:01 Heat of formation + Delta-G solvation = 19.617045 kcal Electronic energy + Delta-G solvation = -14177.732985 eV Core-core repulsion = 11983.008108 eV Total energy + Delta-G solvation = -2194.724877 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.77462 -36.88196 -33.46502 -31.87964 -30.24070 -26.70248 -24.90188 -22.54312 -22.36094 -21.40619 -19.99945 -18.79084 -16.73558 -16.04150 -15.00975 -14.62782 -14.29143 -13.83780 -13.60458 -13.19260 -12.84884 -12.32612 -12.17377 -11.89152 -11.54631 -11.25901 -11.02727 -11.01839 -10.55189 -10.30962 -10.05309 -9.91749 -9.79891 -9.65016 -9.04818 -8.89066 -8.48351 -7.77865 -6.04139 -4.03006 3.31040 3.42100 3.46007 3.80016 4.31944 4.45484 4.83235 4.94736 5.08366 5.27966 5.45277 5.53443 5.58048 5.59705 5.73205 5.83112 5.91746 5.94369 6.06228 6.07313 6.19880 6.30842 6.35769 6.39281 6.53559 6.65185 6.85542 6.88308 7.24068 7.46479 7.67302 7.69543 7.91185 8.55477 8.99091 9.58937 11.09190 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058409 B = 0.007849 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.264140 B = 3566.691493 C = 3838.687494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.035 0.965 11 C -0.123 4.123 12 C -0.120 4.120 13 C 0.065 3.935 14 N -0.541 5.541 15 C 0.085 3.915 16 C -0.139 4.139 17 C -0.187 4.187 18 C -0.181 4.181 19 C 0.077 3.923 20 H 0.263 0.737 21 H 0.055 0.945 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.025 0.975 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.912 -6.036 -1.425 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.063 4.063 14 N -0.265 5.265 15 C -0.043 4.043 16 C -0.158 4.158 17 C -0.224 4.224 18 C -0.219 4.219 19 C -0.050 4.050 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.047 0.953 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 14.898 -5.661 -1.023 15.970 hybrid contribution 0.073 0.464 -0.820 0.945 sum 14.971 -5.197 -1.843 15.954 Atomic orbital electron populations 1.69904 1.06309 1.26904 1.51053 1.24985 0.94665 0.99055 0.94425 0.86816 0.80019 0.83433 0.77827 1.20761 1.22649 1.18801 1.21015 0.88838 0.94474 1.50872 0.90987 1.19159 0.95884 0.91168 0.93715 0.94659 1.22024 0.92725 1.00156 1.01101 1.21686 0.98016 0.95397 1.00710 1.21996 0.98755 0.95150 0.90434 1.61968 1.10127 1.16455 1.37951 1.21627 0.92211 0.90436 1.00021 1.22350 0.93802 0.97014 1.02620 1.23038 1.01587 1.04804 0.92931 1.22926 1.03119 0.96588 0.99253 1.22081 0.83624 0.99641 0.99668 0.92722 0.92627 0.93613 0.92892 0.91893 0.91633 0.95675 0.90641 0.95323 0.87091 0.89155 0.89167 0.89007 0.89015 0.91519 0.95660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 3 Si 0.89 22.41 24.35 -169.99 -4.14 18.27 16 4 H -0.28 -6.89 6.89 56.52 0.39 -6.50 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 7 C -0.51 -14.57 9.15 -34.44 -0.32 -14.89 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 9 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 10 H 0.04 0.89 7.21 -51.93 -0.37 0.52 16 11 C -0.12 -2.71 4.73 -26.61 -0.13 -2.83 16 12 C -0.12 -2.18 6.11 -26.58 -0.16 -2.34 16 13 C 0.06 1.08 5.31 -3.77 -0.02 1.06 16 14 N -0.54 -9.58 4.66 -234.58 -1.09 -10.68 16 15 C 0.09 1.25 5.24 -3.83 -0.02 1.23 16 16 C -0.14 -1.73 4.70 -90.62 -0.43 -2.16 16 17 C -0.19 -1.99 10.18 -26.73 -0.27 -2.26 16 18 C -0.18 -1.87 10.25 -26.73 -0.27 -2.14 16 19 C 0.08 1.59 4.68 -3.83 -0.02 1.57 16 20 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 21 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 22 H 0.05 1.07 3.34 -51.93 -0.17 0.89 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.07 0.96 7.10 -51.93 -0.37 0.59 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 1.09 7.99 -51.93 -0.41 0.67 16 28 H 0.03 0.42 7.86 -51.93 -0.41 0.01 16 29 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.09 0.96 8.03 -51.92 -0.42 0.54 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.37 8.02 -51.93 -0.42 0.96 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -29.72 270.25 -8.26 -37.98 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.98 Total: -1.97 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -1.90 Total: -20.51 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.32 Total: -37.85 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.72 -8.26 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.601 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds