Wall clock time and date at job start Thu Apr 9 2020 11:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00106 * 2 1 4 4 H 1.48493 * 109.47128 * 270.00166 * 3 2 1 5 5 H 1.48500 * 109.47199 * 30.00299 * 3 2 1 6 6 H 1.48503 * 109.47057 * 149.99889 * 3 2 1 7 7 C 1.37878 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00458 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99735 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50701 * 60.07456 * 9 7 2 11 11 C 1.53123 * 109.50215 * 299.99742 * 9 7 2 12 12 C 1.53120 * 109.21163 * 182.33526 * 11 9 7 13 13 C 1.53166 * 109.20873 * 57.62805 * 12 11 9 14 14 N 1.46845 * 109.55463 * 300.85535 * 13 12 11 15 15 C 1.46900 * 111.00045 * 185.84196 * 14 13 12 16 16 C 1.52994 * 109.47274 * 65.79158 * 15 14 13 17 17 C 1.53000 * 117.50007 * 243.62184 * 16 15 14 18 18 C 1.52998 * 60.00347 * 252.50917 * 17 16 15 19 19 C 1.46848 * 111.19518 * 61.74755 * 14 13 12 20 20 H 0.97000 * 120.00000 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.52319 * 302.27319 * 11 9 7 22 22 H 1.08995 * 109.52318 * 62.40000 * 11 9 7 23 23 H 1.09004 * 109.49930 * 177.63007 * 12 11 9 24 24 H 1.08997 * 109.50353 * 297.74224 * 12 11 9 25 25 H 1.09003 * 109.44926 * 180.83262 * 13 12 11 26 26 H 1.09002 * 109.44150 * 60.87652 * 13 12 11 27 27 H 1.09007 * 109.47226 * 185.79563 * 15 14 13 28 28 H 1.09007 * 109.47336 * 305.79107 * 15 14 13 29 29 H 1.08998 * 115.55192 * 29.33227 * 16 15 14 30 30 H 1.09007 * 117.50095 * 0.02562 * 17 16 15 31 31 H 1.09004 * 117.50259 * 145.01848 * 17 16 15 32 32 H 1.08991 * 117.50113 * 252.51282 * 18 17 16 33 33 H 1.09002 * 117.50139 * 107.48555 * 18 17 16 34 34 H 1.09006 * 109.46097 * 178.23945 * 19 14 13 35 35 H 1.08996 * 109.46972 * 58.27256 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8751 -0.6822 0.8910 11 6 4.0232 -0.4716 -1.2493 12 6 5.5532 -0.5263 -1.2718 13 6 6.0057 -1.9893 -1.2394 14 7 5.4916 -2.6360 -0.0255 15 6 6.0202 -4.0000 0.1086 16 6 7.5324 -3.9411 0.3335 17 6 8.4307 -4.5641 -0.7370 18 6 8.2567 -5.2592 0.6147 19 6 4.0232 -2.6364 -0.0052 20 1 -0.4850 0.8400 0.0004 21 1 3.6280 -0.9601 -2.1400 22 1 3.6961 0.5679 -1.2285 23 1 5.9210 -0.0501 -2.1807 24 1 5.9489 -0.0039 -0.4009 25 1 7.0949 -2.0324 -1.2404 26 1 5.6209 -2.5076 -2.1178 27 1 5.5455 -4.4920 0.9576 28 1 5.8099 -4.5623 -0.8013 29 1 7.8979 -3.0480 0.8402 30 1 7.9443 -5.0155 -1.6019 31 1 9.3874 -4.0806 -0.9350 32 1 9.0988 -5.2331 1.3062 33 1 7.6558 -6.1683 0.6396 34 1 3.6725 -3.1494 0.8903 35 1 3.6479 -3.1517 -0.8893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306982815.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:01 Heat of formation + Delta-G solvation = 0.559743 kcal Electronic energy + Delta-G solvation = -14178.559372 eV Core-core repulsion = 11983.008108 eV Total energy + Delta-G solvation = -2195.551264 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.16603 -38.01255 -35.28397 -33.65933 -32.00107 -28.03829 -26.83199 -23.99725 -23.28780 -22.94243 -21.09683 -20.47988 -18.84673 -17.41765 -16.50086 -15.99202 -15.64393 -15.40722 -15.14903 -14.80870 -14.51744 -14.00073 -13.69602 -13.26191 -12.91180 -12.71444 -12.50224 -12.31304 -12.08036 -11.92454 -11.74645 -11.44232 -11.24003 -11.02372 -10.81093 -10.69181 -10.59738 -9.19631 -8.30975 -6.34592 1.29769 1.36294 1.47750 2.32752 2.87496 3.04834 3.08397 3.88060 4.02290 4.07613 4.11898 4.16757 4.29837 4.42273 4.48487 4.62838 4.66459 4.80580 4.82364 4.83443 4.84128 4.98229 5.06558 5.07584 5.15411 5.25259 5.31039 5.37974 5.44597 5.63489 5.72604 6.16907 6.30057 6.35943 6.72698 7.31211 8.85981 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.058409 B = 0.007849 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.264140 B = 3566.691493 C = 3838.687494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.521 4.521 8 H 0.032 0.968 9 C 0.020 3.980 10 H 0.025 0.975 11 C -0.123 4.123 12 C -0.115 4.115 13 C 0.066 3.934 14 N -0.546 5.546 15 C 0.086 3.914 16 C -0.155 4.155 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.087 3.913 20 H 0.266 0.734 21 H 0.047 0.953 22 H 0.035 0.965 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.034 -5.751 -1.929 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.172 1.172 7 C -0.559 4.559 8 H 0.050 0.950 9 C 0.001 3.999 10 H 0.043 0.957 11 C -0.160 4.160 12 C -0.153 4.153 13 C -0.062 4.062 14 N -0.270 5.270 15 C -0.041 4.041 16 C -0.174 4.174 17 C -0.214 4.214 18 C -0.208 4.208 19 C -0.040 4.040 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 18.048 -5.397 -1.531 18.900 hybrid contribution -0.945 0.256 -0.646 1.173 sum 17.104 -5.141 -2.177 17.992 Atomic orbital electron populations 1.70050 1.08191 1.28036 1.52842 1.25852 0.95413 1.03004 0.94127 0.85780 0.79079 0.78551 0.78655 1.19250 1.22636 1.17196 1.21343 0.91498 0.93005 1.50076 0.94964 1.19069 0.92879 0.93554 0.94422 0.95683 1.21927 0.96012 0.98814 0.99276 1.21670 0.94526 0.96774 1.02296 1.22055 1.00301 0.94017 0.89786 1.61932 1.07638 1.18610 1.38844 1.21665 0.93894 0.88598 0.99979 1.22174 0.92197 0.98182 1.04812 1.23112 1.01473 1.04021 0.92817 1.23021 1.02886 0.95467 0.99379 1.21782 0.86150 0.97259 0.98848 0.92537 0.93414 0.94656 0.89906 0.91801 0.88768 0.95685 0.91060 0.95088 0.87643 0.89067 0.87765 0.87576 0.88620 0.92350 0.96714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 2 C 0.01 0.77 5.45 84.65 0.46 1.23 16 3 Si 0.95 46.29 24.35 68.60 1.67 47.96 16 4 H -0.27 -12.27 6.89 99.48 0.69 -11.59 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 7 C -0.52 -30.52 9.15 25.60 0.23 -30.28 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 9 C 0.02 0.96 1.85 -11.49 -0.02 0.94 16 10 H 0.03 1.25 7.21 -2.39 -0.02 1.24 16 11 C -0.12 -5.24 4.73 30.68 0.15 -5.10 16 12 C -0.11 -3.80 6.11 30.69 0.19 -3.61 16 13 C 0.07 2.00 5.31 86.37 0.46 2.46 16 14 N -0.55 -18.46 4.66 -896.08 -4.17 -22.63 16 15 C 0.09 2.37 5.24 86.30 0.45 2.83 16 16 C -0.16 -3.42 4.70 -10.79 -0.05 -3.47 16 17 C -0.18 -3.15 10.18 30.59 0.31 -2.83 16 18 C -0.17 -2.96 10.25 30.60 0.31 -2.65 16 19 C 0.09 3.63 4.68 86.33 0.40 4.04 16 20 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 21 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 22 H 0.04 1.57 3.34 -2.39 -0.01 1.56 16 23 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.09 2.37 7.10 -2.39 -0.02 2.35 16 26 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.99 7.99 -2.38 -0.02 1.97 16 28 H 0.03 0.84 7.86 -2.38 -0.02 0.82 16 29 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.09 1.62 8.03 -2.38 -0.02 1.60 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 2.47 8.02 -2.38 -0.02 2.45 16 35 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -65.03 270.25 1.65 -63.38 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.96 Total: 8.07 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.90 Total: -36.46 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -3.87 Total: -82.95 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -65.03 1.65 -63.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982815.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.942 kcal (2) G-P(sol) polarization free energy of solvation -65.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds