Wall clock time and date at job start Thu Apr 9 2020 11:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00015 * 2 1 4 4 H 1.48497 * 109.47402 * 270.00330 * 3 2 1 5 5 H 1.48504 * 109.47240 * 30.00034 * 3 2 1 6 6 H 1.48501 * 109.47308 * 150.00168 * 3 2 1 7 7 C 1.37880 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99873 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99919 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.50479 * 300.00361 * 9 7 2 11 11 C 1.53119 * 109.50187 * 60.08126 * 9 7 2 12 12 C 1.53119 * 109.15731 * 177.63352 * 11 9 7 13 13 C 1.53039 * 109.28129 * 302.34211 * 12 11 9 14 14 N 1.46848 * 109.51997 * 59.18522 * 13 12 11 15 15 C 1.46897 * 111.00171 * 174.16537 * 14 13 12 16 16 C 1.53008 * 109.46633 * 293.95015 * 15 14 13 17 17 C 1.53007 * 117.49520 * 243.62172 * 16 15 14 18 18 C 1.52998 * 117.49755 * 175.00047 * 16 15 14 19 19 C 1.46855 * 111.19639 * 298.25566 * 14 13 12 20 20 H 0.97001 * 120.00645 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.52613 * 297.53923 * 11 9 7 22 22 H 1.09004 * 109.52408 * 57.66768 * 11 9 7 23 23 H 1.08998 * 109.50840 * 62.28812 * 12 11 9 24 24 H 1.09009 * 109.50099 * 182.36576 * 12 11 9 25 25 H 1.09001 * 109.46699 * 179.19867 * 13 12 11 26 26 H 1.09003 * 109.46524 * 299.16842 * 13 12 11 27 27 H 1.08997 * 109.47484 * 53.94451 * 15 14 13 28 28 H 1.09002 * 109.47540 * 173.95120 * 15 14 13 29 29 H 1.08999 * 115.54768 * 29.32869 * 16 15 14 30 30 H 1.08997 * 117.50057 * 0.02562 * 17 16 15 31 31 H 1.09001 * 117.49208 * 145.02216 * 17 16 15 32 32 H 1.08998 * 117.49855 * 214.97400 * 18 16 15 33 33 H 1.09005 * 117.49923 * 0.02562 * 18 16 15 34 34 H 1.09003 * 109.46449 * 301.72795 * 19 14 13 35 35 H 1.08992 * 109.46444 * 181.76011 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6244 -2.5576 0.8895 11 6 0.3715 -2.5816 -1.2512 12 6 -0.3449 -3.9347 -1.2734 13 6 0.6946 -5.0574 -1.2396 14 7 1.5098 -4.9350 -0.0244 15 6 2.4266 -6.0746 0.1116 16 6 1.6193 -7.3538 0.3422 17 6 1.8093 -8.0780 1.6766 18 6 2.3887 -8.6752 0.3926 19 6 2.2443 -3.6634 -0.0036 20 1 -0.4851 0.8400 0.0004 21 1 -0.3660 -1.7792 -1.2315 22 1 0.9934 -2.4830 -2.1410 23 1 -0.9965 -4.0158 -0.4035 24 1 -0.9402 -4.0164 -2.1829 25 1 0.1873 -6.0222 -1.2410 26 1 1.3372 -4.9839 -2.1170 27 1 3.0169 -6.1768 -0.7990 28 1 3.0916 -5.9070 0.9588 29 1 0.6237 -7.3676 -0.1011 30 1 2.5089 -7.6430 2.3902 31 1 0.9383 -8.5685 2.1113 32 1 1.8991 -9.5586 -0.0172 33 1 3.4701 -8.6333 0.2619 34 1 2.8796 -3.5965 -0.8868 35 1 2.8625 -3.6157 0.8928 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306982816.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:02 Heat of formation + Delta-G solvation = -2.775636 kcal Electronic energy + Delta-G solvation = -14075.258956 eV Core-core repulsion = 11879.563059 eV Total energy + Delta-G solvation = -2195.695897 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03395 -37.92999 -35.31602 -33.25511 -31.70355 -27.73437 -26.91723 -23.75161 -23.37114 -23.12895 -20.98363 -20.34806 -18.45761 -17.11637 -16.51669 -15.99964 -15.82631 -15.03024 -14.93090 -14.61777 -14.19594 -13.97228 -13.57680 -12.95295 -12.83256 -12.72800 -12.53515 -12.32299 -12.14636 -11.86060 -11.71360 -11.37638 -11.18890 -10.91389 -10.71597 -10.64849 -10.37096 -9.10422 -8.07920 -6.22507 1.41534 1.41895 1.52471 2.42804 2.85777 3.18829 3.22262 3.83981 4.04888 4.15727 4.24515 4.28067 4.42267 4.49812 4.60654 4.68109 4.76196 4.80184 4.84127 4.89890 4.99142 5.08477 5.11596 5.18222 5.32163 5.35315 5.41448 5.52462 5.63464 5.96833 6.12654 6.21495 6.38796 6.46220 6.90136 7.45426 8.96885 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.055451 B = 0.007122 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.828887 B = 3930.345733 C = 4211.014962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.066 3.934 14 N -0.547 5.547 15 C 0.087 3.913 16 C -0.160 4.160 17 C -0.177 4.177 18 C -0.166 4.166 19 C 0.082 3.918 20 H 0.261 0.739 21 H 0.058 0.942 22 H 0.022 0.978 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.014 0.986 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -13.623 -1.127 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.062 4.062 14 N -0.272 5.272 15 C -0.041 4.041 16 C -0.178 4.178 17 C -0.214 4.214 18 C -0.204 4.204 19 C -0.046 4.046 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.116 0.884 34 H 0.032 0.968 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.457 -13.510 -0.720 13.750 hybrid contribution 0.798 1.296 -0.588 1.631 sum 3.255 -12.214 -1.308 12.708 Atomic orbital electron populations 1.70035 1.07223 1.27116 1.51178 1.25734 0.95673 1.02381 0.94710 0.85595 0.78722 0.79320 0.78237 1.20089 1.20811 1.19298 1.21525 0.92981 0.92205 1.50925 0.93076 1.18594 0.93015 0.91314 0.93784 0.98573 1.21467 0.99115 0.96356 0.97320 1.21597 0.97559 0.94850 1.00897 1.22061 0.95176 0.99139 0.89791 1.61896 1.24787 1.01903 1.38613 1.21663 0.93390 0.89038 0.99976 1.22239 1.00760 0.91922 1.02882 1.23047 1.03516 1.03889 0.90993 1.23042 1.00237 0.95936 1.01136 1.21975 0.95334 0.89001 0.98292 0.93025 0.92326 0.95938 0.93145 0.91154 0.89240 0.95810 0.94871 0.91278 0.87788 0.89085 0.88207 0.87398 0.88392 0.96763 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.17 11.35 21.45 0.24 -53.92 16 2 C 0.01 0.78 5.30 84.66 0.45 1.23 16 3 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -30.58 8.56 25.60 0.22 -30.36 16 8 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 10 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 11 C -0.10 -5.16 5.03 30.67 0.15 -5.00 16 12 C -0.11 -4.40 6.09 30.65 0.19 -4.22 16 13 C 0.07 2.28 5.31 86.33 0.46 2.74 16 14 N -0.55 -20.50 4.66 -896.32 -4.17 -24.67 16 15 C 0.09 2.60 5.24 86.31 0.45 3.05 16 16 C -0.16 -3.93 5.67 -10.79 -0.06 -3.99 16 17 C -0.18 -3.79 10.18 30.60 0.31 -3.48 16 18 C -0.17 -3.13 10.25 30.60 0.31 -2.81 16 19 C 0.08 3.60 4.68 86.32 0.40 4.00 16 20 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 21 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 22 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 25 H 0.09 2.60 6.17 -2.39 -0.01 2.59 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 28 H 0.07 2.05 7.72 -2.39 -0.02 2.03 16 29 H 0.10 2.62 6.35 -2.39 -0.02 2.61 16 30 H 0.09 1.97 8.03 -2.39 -0.02 1.95 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -61.19 275.33 1.99 -59.19 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.03 Total: 9.20 kcal Atomic # 6 Polarization: -39.00 SS G_CDS: 2.86 Total: -36.14 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -3.93 Total: -78.60 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.19 1.99 -59.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306982816.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.419 kcal (2) G-P(sol) polarization free energy of solvation -61.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds