Wall clock time and date at job start Thu Apr 9 2020 11:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99783 * 2 1 4 4 H 1.48506 * 109.46889 * 270.00073 * 3 2 1 5 5 H 1.48503 * 109.47142 * 29.99774 * 3 2 1 6 6 H 1.48499 * 109.47118 * 150.00405 * 3 2 1 7 7 C 1.37873 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99789 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00544 * 179.97438 * 7 2 1 10 10 N 1.46892 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00049 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.12684 * 326.57683 * 11 10 9 13 13 C 1.54469 * 110.09367 * 88.15143 * 11 10 9 14 14 C 1.54954 * 104.22743 * 142.72375 * 13 11 10 15 15 C 1.55065 * 102.86126 * 322.44721 * 14 13 11 16 16 C 1.53177 * 110.09652 * 205.00325 * 11 10 9 17 17 C 1.53024 * 115.34685 * 110.76450 * 16 11 10 18 18 C 1.53919 * 86.84921 * 217.81184 * 17 16 11 19 19 C 1.53187 * 115.41874 * 10.38583 * 16 11 10 20 20 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47100 * 59.99695 * 9 7 2 22 22 H 1.09005 * 109.47140 * 300.00168 * 9 7 2 23 23 H 1.00898 * 111.00192 * 303.95728 * 10 9 7 24 24 H 1.09001 * 110.48131 * 24.04420 * 13 11 10 25 25 H 1.08994 * 110.59428 * 261.46868 * 13 11 10 26 26 H 1.09002 * 110.73903 * 204.10383 * 14 13 11 27 27 H 1.09003 * 110.73465 * 80.78913 * 14 13 11 28 28 H 1.09002 * 110.52040 * 278.68435 * 15 14 13 29 29 H 1.08993 * 110.64645 * 155.99079 * 15 14 13 30 30 H 1.08998 * 113.64785 * 103.32380 * 17 16 11 31 31 H 1.08995 * 113.73350 * 332.31125 * 17 16 11 32 32 H 1.09002 * 113.59125 * 139.44836 * 18 17 16 33 33 H 1.08999 * 113.59077 * 270.19730 * 18 17 16 34 34 H 1.09002 * 113.64838 * 27.65962 * 19 16 11 35 35 H 1.09000 * 113.70159 * 256.59480 * 19 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6180 -0.0022 12 1 5.8670 -1.7743 -0.5665 13 6 6.0027 -2.5848 1.4473 14 6 7.2312 -3.5289 1.4231 15 6 6.7761 -4.6631 0.4687 16 6 5.9607 -3.9355 -0.6101 17 6 6.6486 -3.8126 -1.9714 18 6 5.9516 -5.1324 -2.3477 19 6 4.8850 -4.7854 -1.2936 20 1 -0.4850 0.8401 0.0004 21 1 3.8753 -0.6803 0.8889 22 1 3.8746 -0.6799 -0.8911 23 1 3.6261 -3.0950 0.7806 24 1 5.2483 -2.9585 2.1397 25 1 6.3038 -1.5740 1.7220 26 1 7.4360 -3.9215 2.4191 27 1 8.1050 -3.0149 1.0225 28 1 6.1520 -5.3819 0.9997 29 1 7.6382 -5.1612 0.0252 30 1 7.7346 -3.8906 -1.9211 31 1 6.3118 -2.9577 -2.5576 32 1 5.5680 -5.1477 -3.3678 33 1 6.5353 -6.0195 -2.1019 34 1 4.0530 -4.2026 -1.6888 35 1 4.5608 -5.6411 -0.7013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307143215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:04 Heat of formation + Delta-G solvation = 6.926715 kcal Electronic energy + Delta-G solvation = -14228.413285 eV Core-core repulsion = 12033.138113 eV Total energy + Delta-G solvation = -2195.275171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.95184 -35.52157 -33.72116 -32.04920 -28.18940 -26.72728 -25.50769 -24.90569 -21.42575 -21.16531 -20.23612 -17.79061 -16.68128 -15.67068 -15.17275 -14.51874 -14.31693 -13.73544 -13.30048 -13.00125 -12.79640 -12.49633 -11.94709 -11.75330 -11.57087 -11.37683 -10.87201 -10.68297 -10.63413 -10.45635 -10.33840 -10.04940 -9.88185 -9.71037 -9.59311 -9.21751 -8.57326 -7.33288 -6.04366 -4.01805 3.29473 3.36556 3.39239 4.43287 4.71782 4.76456 4.82166 5.13268 5.23529 5.27187 5.30462 5.48018 5.49880 5.77546 5.82521 5.84590 5.90052 6.04524 6.07747 6.13045 6.15217 6.24140 6.35665 6.41824 6.48536 6.61779 6.75833 6.84339 7.01283 7.09811 7.64968 7.97744 8.41182 8.68878 9.04154 9.58216 11.08995 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039957 B = 0.008367 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.586341 B = 3345.806258 C = 3623.592202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.669 5.669 11 C 0.094 3.906 12 H 0.071 0.929 13 C -0.153 4.153 14 C -0.121 4.121 15 C -0.100 4.100 16 C -0.078 4.078 17 C -0.125 4.125 18 C -0.147 4.147 19 C -0.110 4.110 20 H 0.263 0.737 21 H -0.017 1.017 22 H 0.019 0.981 23 H 0.336 0.664 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.486 -7.592 -0.088 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.297 5.297 11 C -0.018 4.018 12 H 0.089 0.911 13 C -0.193 4.193 14 C -0.159 4.159 15 C -0.138 4.138 16 C -0.079 4.079 17 C -0.163 4.163 18 C -0.184 4.184 19 C -0.147 4.147 20 H 0.073 0.927 21 H 0.000 1.000 22 H 0.037 0.963 23 H 0.154 0.846 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.245 -7.519 -0.779 16.126 hybrid contribution 0.594 1.322 0.951 1.733 sum 14.839 -6.197 0.171 16.082 Atomic orbital electron populations 1.69905 1.06149 1.26806 1.51197 1.24910 0.94732 0.98924 0.94817 0.86833 0.80265 0.83929 0.78544 1.20209 1.21270 1.19287 1.21083 0.89077 0.94728 1.50323 0.90333 1.20005 0.96443 0.85399 0.94534 1.60506 1.03916 1.16132 1.49191 1.22038 0.90012 0.96320 0.93409 0.91099 1.23190 0.97868 0.99208 0.99015 1.22439 0.97786 0.96777 0.98875 1.22110 0.98711 0.97039 0.95913 1.21976 0.96598 0.95829 0.93512 1.22843 0.98510 0.98179 0.96746 1.22900 0.99007 0.97060 0.99477 1.22767 0.97054 0.98420 0.96494 0.92710 0.99963 0.96263 0.84628 0.91543 0.92288 0.92192 0.91936 0.91573 0.92137 0.92384 0.90172 0.92088 0.91246 0.87613 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.51 -14.77 9.87 -34.44 -0.34 -15.11 16 8 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 9 C 0.16 4.00 4.34 -4.98 -0.02 3.98 16 10 N -0.67 -13.67 4.61 -107.08 -0.49 -14.16 16 11 C 0.09 1.58 2.98 -66.85 -0.20 1.39 16 12 H 0.07 1.27 7.58 -51.93 -0.39 0.88 16 13 C -0.15 -2.32 6.48 -24.93 -0.16 -2.48 16 14 C -0.12 -1.49 6.91 -24.61 -0.17 -1.66 16 15 C -0.10 -1.24 5.99 -25.35 -0.15 -1.39 16 16 C -0.08 -1.13 1.13 -154.02 -0.17 -1.30 16 17 C -0.13 -1.67 7.14 -26.24 -0.19 -1.86 16 18 C -0.15 -1.87 7.90 -25.78 -0.20 -2.08 16 19 C -0.11 -1.64 6.74 -26.15 -0.18 -1.81 16 20 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 21 H -0.02 -0.43 7.20 -51.93 -0.37 -0.80 16 22 H 0.02 0.48 7.50 -51.93 -0.39 0.09 16 23 H 0.34 6.79 8.10 -39.29 -0.32 6.47 16 24 H 0.07 1.04 7.56 -51.93 -0.39 0.64 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.82 8.03 -51.93 -0.42 0.40 16 29 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 30 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 31 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.87 7.23 -51.93 -0.38 1.50 16 35 H 0.05 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -29.57 274.07 -8.17 -37.74 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.03 Total: 2.72 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -1.88 Total: -20.45 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.28 Total: -41.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.57 -8.17 -37.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307143215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.666 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds