Wall clock time and date at job start Thu Apr 9 2020 11:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99783 * 2 1 4 4 H 1.48506 * 109.46889 * 270.00073 * 3 2 1 5 5 H 1.48503 * 109.47142 * 29.99774 * 3 2 1 6 6 H 1.48499 * 109.47118 * 150.00405 * 3 2 1 7 7 C 1.37873 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99789 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00544 * 179.97438 * 7 2 1 10 10 N 1.46892 * 109.47375 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00049 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.12684 * 326.57683 * 11 10 9 13 13 C 1.54469 * 110.09367 * 88.15143 * 11 10 9 14 14 C 1.54954 * 104.22743 * 142.72375 * 13 11 10 15 15 C 1.55065 * 102.86126 * 322.44721 * 14 13 11 16 16 C 1.53177 * 110.09652 * 205.00325 * 11 10 9 17 17 C 1.53024 * 115.34685 * 110.76450 * 16 11 10 18 18 C 1.53919 * 86.84921 * 217.81184 * 17 16 11 19 19 C 1.53187 * 115.41874 * 10.38583 * 16 11 10 20 20 H 0.97001 * 119.99910 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47100 * 59.99695 * 9 7 2 22 22 H 1.09005 * 109.47140 * 300.00168 * 9 7 2 23 23 H 1.00898 * 111.00192 * 303.95728 * 10 9 7 24 24 H 1.09001 * 110.48131 * 24.04420 * 13 11 10 25 25 H 1.08994 * 110.59428 * 261.46868 * 13 11 10 26 26 H 1.09002 * 110.73903 * 204.10383 * 14 13 11 27 27 H 1.09003 * 110.73465 * 80.78913 * 14 13 11 28 28 H 1.09002 * 110.52040 * 278.68435 * 15 14 13 29 29 H 1.08993 * 110.64645 * 155.99079 * 15 14 13 30 30 H 1.08998 * 113.64785 * 103.32380 * 17 16 11 31 31 H 1.08995 * 113.73350 * 332.31125 * 17 16 11 32 32 H 1.09002 * 113.59125 * 139.44836 * 18 17 16 33 33 H 1.08999 * 113.59077 * 270.19730 * 18 17 16 34 34 H 1.09002 * 113.64838 * 27.65962 * 19 16 11 35 35 H 1.09000 * 113.70159 * 256.59480 * 19 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5789 -0.0010 11 6 5.4698 -2.6180 -0.0022 12 1 5.8670 -1.7743 -0.5665 13 6 6.0027 -2.5848 1.4473 14 6 7.2312 -3.5289 1.4231 15 6 6.7761 -4.6631 0.4687 16 6 5.9607 -3.9355 -0.6101 17 6 6.6486 -3.8126 -1.9714 18 6 5.9516 -5.1324 -2.3477 19 6 4.8850 -4.7854 -1.2936 20 1 -0.4850 0.8401 0.0004 21 1 3.8753 -0.6803 0.8889 22 1 3.8746 -0.6799 -0.8911 23 1 3.6261 -3.0950 0.7806 24 1 5.2483 -2.9585 2.1397 25 1 6.3038 -1.5740 1.7220 26 1 7.4360 -3.9215 2.4191 27 1 8.1050 -3.0149 1.0225 28 1 6.1520 -5.3819 0.9997 29 1 7.6382 -5.1612 0.0252 30 1 7.7346 -3.8906 -1.9211 31 1 6.3118 -2.9577 -2.5576 32 1 5.5680 -5.1477 -3.3678 33 1 6.5353 -6.0195 -2.1019 34 1 4.0530 -4.2026 -1.6888 35 1 4.5608 -5.6411 -0.7013 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307143215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:03 Heat of formation + Delta-G solvation = -11.116481 kcal Electronic energy + Delta-G solvation = -14229.195696 eV Core-core repulsion = 12033.138113 eV Total energy + Delta-G solvation = -2196.057583 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12322 -36.97599 -35.30939 -34.01466 -29.95516 -27.87679 -26.80959 -26.31982 -23.18599 -22.44638 -21.49131 -19.26437 -18.53665 -17.08463 -16.42599 -16.12283 -15.73690 -15.41523 -14.82802 -14.40961 -14.22942 -13.90782 -13.62375 -13.19325 -13.04806 -12.72718 -12.40091 -12.11110 -11.91606 -11.84876 -11.72313 -11.57100 -11.49514 -11.05082 -10.85453 -10.83567 -10.77681 -8.98453 -8.31914 -6.35820 1.31978 1.33166 1.44429 2.31616 3.02025 3.41392 3.63058 3.72325 3.98231 4.07040 4.18800 4.33886 4.37604 4.54918 4.62443 4.77453 4.85013 4.85921 4.95729 5.00174 5.08317 5.10069 5.10592 5.17652 5.22670 5.31061 5.37700 5.45706 5.52344 5.64522 5.84370 6.01246 6.59006 6.68447 6.80312 7.29411 8.84872 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.039957 B = 0.008367 C = 0.007725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.586341 B = 3345.806258 C = 3623.592202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.525 4.525 8 H 0.037 0.963 9 C 0.178 3.822 10 N -0.673 5.673 11 C 0.087 3.913 12 H 0.060 0.940 13 C -0.154 4.154 14 C -0.111 4.111 15 C -0.094 4.094 16 C -0.078 4.078 17 C -0.123 4.123 18 C -0.134 4.134 19 C -0.119 4.119 20 H 0.267 0.733 21 H -0.017 1.017 22 H 0.017 0.983 23 H 0.334 0.666 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.407 -7.705 0.097 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.564 4.564 8 H 0.055 0.945 9 C 0.050 3.950 10 N -0.302 5.302 11 C -0.024 4.024 12 H 0.078 0.922 13 C -0.194 4.194 14 C -0.149 4.149 15 C -0.132 4.132 16 C -0.079 4.079 17 C -0.161 4.161 18 C -0.171 4.171 19 C -0.157 4.157 20 H 0.076 0.924 21 H 0.000 1.000 22 H 0.035 0.965 23 H 0.152 0.848 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.186 -7.653 -0.596 18.823 hybrid contribution -0.391 1.274 0.883 1.599 sum 16.795 -6.379 0.287 17.968 Atomic orbital electron populations 1.70055 1.08103 1.28170 1.52457 1.25871 0.95635 1.03236 0.94236 0.85675 0.79258 0.78560 0.79179 1.19168 1.20454 1.17688 1.21351 0.91459 0.93366 1.50183 0.94459 1.19710 0.93513 0.87690 0.94136 1.60439 1.06658 1.13761 1.49359 1.22193 0.87449 0.97668 0.95056 0.92206 1.23141 0.99114 0.99953 0.97148 1.22417 0.96547 0.95927 1.00027 1.22101 0.99100 0.96896 0.95062 1.22041 0.96775 0.94414 0.94625 1.22816 0.99839 0.97885 0.95532 1.22866 0.97855 0.97673 0.98716 1.22690 0.96809 0.98373 0.97855 0.92367 0.99961 0.96500 0.84800 0.92407 0.92661 0.90431 0.90709 0.91491 0.89771 0.90048 0.91819 0.92043 0.88859 0.91257 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 2 C 0.01 0.45 5.47 84.65 0.46 0.92 16 3 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.25 -11.33 6.54 99.48 0.65 -10.67 16 7 C -0.53 -31.22 9.87 25.60 0.25 -30.96 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.43 16 9 C 0.18 8.78 4.34 85.56 0.37 9.16 16 10 N -0.67 -28.06 4.61 -492.70 -2.27 -30.34 16 11 C 0.09 2.88 2.98 45.47 0.14 3.01 16 12 H 0.06 2.10 7.58 -2.39 -0.02 2.09 16 13 C -0.15 -4.42 6.48 31.76 0.21 -4.22 16 14 C -0.11 -2.37 6.91 31.97 0.22 -2.15 16 15 C -0.09 -2.01 5.99 31.49 0.19 -1.82 16 16 C -0.08 -2.10 1.13 -51.87 -0.06 -2.16 16 17 C -0.12 -3.00 7.14 30.91 0.22 -2.78 16 18 C -0.13 -3.10 7.90 31.21 0.25 -2.85 16 19 C -0.12 -3.49 6.74 30.97 0.21 -3.28 16 20 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 21 H -0.02 -0.84 7.20 -2.38 -0.02 -0.86 16 22 H 0.02 0.84 7.50 -2.38 -0.02 0.83 16 23 H 0.33 13.95 8.10 -89.70 -0.73 13.22 16 24 H 0.06 1.75 7.56 -2.39 -0.02 1.73 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.44 8.03 -2.39 -0.02 1.42 16 29 H 0.08 1.46 7.88 -2.39 -0.02 1.44 16 30 H 0.08 1.62 8.03 -2.39 -0.02 1.60 16 31 H 0.06 1.75 8.11 -2.39 -0.02 1.74 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.54 7.23 -2.39 -0.02 2.52 16 35 H 0.06 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -65.01 274.07 2.63 -62.37 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.26 Total: 17.99 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.46 Total: -37.14 kcal Atomic # 7 Polarization: -88.31 SS G_CDS: -1.97 Total: -90.28 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -65.01 2.63 -62.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307143215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.258 kcal (2) G-P(sol) polarization free energy of solvation -65.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds