Wall clock time and date at job start Thu Apr 9 2020 11:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48503 * 109.47009 * 269.99577 * 3 2 1 5 5 H 1.48497 * 109.47220 * 29.99671 * 3 2 1 6 6 H 1.48501 * 109.47276 * 149.99948 * 3 2 1 7 7 C 1.38818 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99536 * 164.40467 * 7 2 1 9 9 N 1.36938 * 120.00145 * 344.41091 * 7 2 1 10 10 C 1.47067 * 121.08521 * 155.78727 * 9 7 2 11 11 C 1.53046 * 109.11802 * 115.37878 * 10 9 7 12 12 C 1.52101 * 109.12541 * 46.91335 * 11 10 9 13 13 N 1.32602 * 124.02585 * 161.09147 * 12 11 10 14 14 C 1.28656 * 117.94217 * 179.43206 * 13 12 11 15 15 S 1.70924 * 110.13106 * 0.08310 * 14 13 12 16 16 C 1.34614 * 122.96696 * 340.73422 * 12 11 10 17 17 C 1.47316 * 121.08348 * 335.76363 * 9 7 2 18 18 H 0.97001 * 120.00129 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.52885 * 235.26778 * 10 9 7 20 20 H 1.09003 * 109.53124 * 355.41672 * 10 9 7 21 21 H 1.09002 * 109.52199 * 287.02492 * 11 10 9 22 22 H 1.09002 * 109.53656 * 166.80989 * 11 10 9 23 23 H 1.07997 * 124.93635 * 180.02562 * 14 13 12 24 24 H 1.09001 * 109.85839 * 103.94582 * 17 9 7 25 25 H 1.08995 * 109.86063 * 342.91779 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0603 -1.2195 -0.2509 9 7 1.3632 -2.3662 0.3198 10 6 1.8607 -3.6662 -0.1548 11 6 2.2948 -4.5064 1.0485 12 6 1.2124 -4.4455 2.1153 13 7 1.0960 -5.3202 3.1051 14 6 0.1413 -5.1504 3.9505 15 16 -0.7689 -3.7634 3.5393 16 6 0.2722 -3.4827 2.1508 17 6 0.1464 -2.3570 1.1502 18 1 -0.4850 0.8400 -0.0004 19 1 1.0682 -4.1847 -0.6944 20 1 2.7117 -3.5107 -0.8180 21 1 3.2268 -4.1105 1.4520 22 1 2.4416 -5.5406 0.7370 23 1 -0.0569 -5.7917 4.7966 24 1 -0.7310 -2.5151 0.5232 25 1 0.0622 -1.4043 1.6731 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307166846.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:06 Heat of formation + Delta-G solvation = 65.309006 kcal Electronic energy + Delta-G solvation = -11787.616496 eV Core-core repulsion = 9700.533742 eV Total energy + Delta-G solvation = -2087.082754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.32514 -36.06249 -32.41916 -29.95222 -29.62370 -25.74733 -23.77800 -23.00335 -21.03798 -18.19173 -17.51387 -16.31894 -15.11992 -14.53148 -14.43719 -13.73877 -13.36551 -12.91402 -12.78650 -12.07088 -11.52782 -11.37316 -11.14656 -10.83242 -10.65937 -10.40088 -9.97365 -9.89975 -9.11198 -8.85330 -8.50865 -7.93009 -6.91586 -5.92950 -3.31288 1.35803 1.93453 2.34167 3.33214 3.36510 3.40195 3.42805 4.40524 4.65173 5.27262 5.37545 5.56184 5.82108 5.95933 6.10501 6.15705 6.48691 6.60909 6.71889 6.84717 7.07592 7.32951 7.68002 8.23343 8.27923 9.04210 9.67342 10.24018 11.18560 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.045097 B = 0.010666 C = 0.009386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.735799 B = 2624.584907 C = 2982.482666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.002 3.998 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.588 5.588 10 C 0.143 3.857 11 C -0.052 4.052 12 C 0.041 3.959 13 N -0.471 5.471 14 C -0.007 4.007 15 S 0.078 5.922 16 C -0.196 4.196 17 C 0.243 3.757 18 H 0.257 0.743 19 H 0.029 0.971 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.189 0.811 24 H 0.052 0.948 25 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -6.588 4.905 8.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.197 4.197 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.091 0.909 9 N -0.310 5.310 10 C 0.016 3.984 11 C -0.094 4.094 12 C -0.088 4.088 13 N -0.184 5.184 14 C -0.306 4.306 15 S 0.329 5.671 16 C -0.318 4.318 17 C 0.115 3.885 18 H 0.067 0.933 19 H 0.048 0.952 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.206 0.794 24 H 0.069 0.931 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.280 -6.414 5.426 8.498 hybrid contribution 0.940 0.680 -0.324 1.204 sum -0.340 -5.734 5.103 7.683 Atomic orbital electron populations 1.69973 1.05298 1.25966 1.53965 1.25032 0.95431 0.98565 1.00636 0.86210 0.79115 0.83150 0.77827 1.21191 1.21423 1.20384 1.19213 0.92559 0.84212 1.42123 0.90937 1.44124 1.29676 1.01684 1.55562 1.20945 0.97868 0.86828 0.92765 1.20946 0.94653 1.00331 0.93509 1.20801 0.99505 0.91701 0.96824 1.65847 1.20310 1.28624 1.03630 1.27821 0.97189 1.01760 1.03815 1.83782 1.34518 1.25559 1.23201 1.27850 0.98443 1.04703 1.00826 1.19563 0.89558 0.91861 0.87492 0.93278 0.95245 0.91312 0.90889 0.91304 0.79413 0.93067 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.54 11.08 55.49 0.61 -24.92 15 2 C 0.00 0.05 5.00 -17.43 -0.09 -0.04 15 3 Si 0.91 21.24 29.58 -169.99 -5.03 16.21 15 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.25 -6.76 9.67 -15.06 -0.15 -6.91 15 8 H 0.07 1.89 7.88 -52.49 -0.41 1.48 15 9 N -0.59 -14.70 2.99 -173.20 -0.52 -15.22 15 10 C 0.14 2.98 6.42 -3.71 -0.02 2.96 15 11 C -0.05 -1.00 6.46 -27.17 -0.18 -1.18 15 12 C 0.04 0.84 6.80 -82.85 -0.56 0.27 15 13 N -0.47 -9.05 10.51 -11.15 -0.12 -9.17 15 14 C -0.01 -0.11 12.23 51.43 0.63 0.51 15 15 S 0.08 1.33 23.21 -107.50 -2.50 -1.17 15 16 C -0.20 -4.14 6.49 -35.37 -0.23 -4.37 15 17 C 0.24 5.88 5.36 -4.53 -0.02 5.85 15 18 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 19 H 0.03 0.61 8.14 -51.93 -0.42 0.18 15 20 H 0.07 1.34 7.94 -51.93 -0.41 0.93 15 21 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.19 2.22 8.06 -52.49 -0.42 1.80 15 24 H 0.05 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.10 2.64 6.43 -51.93 -0.33 2.31 15 LS Contribution 228.29 15.07 3.44 3.44 Total: -1.00 -29.31 228.29 -7.13 -36.44 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -2.41 Total: -2.73 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.62 Total: -2.89 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.02 Total: -49.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.31 -7.13 -36.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307166846.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.750 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds