Wall clock time and date at job start Thu Apr 9 2020 11:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31609 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48503 * 109.47009 * 269.99577 * 3 2 1 5 5 H 1.48497 * 109.47220 * 29.99671 * 3 2 1 6 6 H 1.48501 * 109.47276 * 149.99948 * 3 2 1 7 7 C 1.38818 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99536 * 164.40467 * 7 2 1 9 9 N 1.36938 * 120.00145 * 344.41091 * 7 2 1 10 10 C 1.47067 * 121.08521 * 155.78727 * 9 7 2 11 11 C 1.53046 * 109.11802 * 115.37878 * 10 9 7 12 12 C 1.52101 * 109.12541 * 46.91335 * 11 10 9 13 13 N 1.32602 * 124.02585 * 161.09147 * 12 11 10 14 14 C 1.28656 * 117.94217 * 179.43206 * 13 12 11 15 15 S 1.70924 * 110.13106 * 0.08310 * 14 13 12 16 16 C 1.34614 * 122.96696 * 340.73422 * 12 11 10 17 17 C 1.47316 * 121.08348 * 335.76363 * 9 7 2 18 18 H 0.97001 * 120.00129 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.52885 * 235.26778 * 10 9 7 20 20 H 1.09003 * 109.53124 * 355.41672 * 10 9 7 21 21 H 1.09002 * 109.52199 * 287.02492 * 11 10 9 22 22 H 1.09002 * 109.53656 * 166.80989 * 11 10 9 23 23 H 1.07997 * 124.93635 * 180.02562 * 14 13 12 24 24 H 1.09001 * 109.85839 * 103.94582 * 17 9 7 25 25 H 1.08995 * 109.86063 * 342.91779 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0603 -1.2195 -0.2509 9 7 1.3632 -2.3662 0.3198 10 6 1.8607 -3.6662 -0.1548 11 6 2.2948 -4.5064 1.0485 12 6 1.2124 -4.4455 2.1153 13 7 1.0960 -5.3202 3.1051 14 6 0.1413 -5.1504 3.9505 15 16 -0.7689 -3.7634 3.5393 16 6 0.2722 -3.4827 2.1508 17 6 0.1464 -2.3570 1.1502 18 1 -0.4850 0.8400 -0.0004 19 1 1.0682 -4.1847 -0.6944 20 1 2.7117 -3.5107 -0.8180 21 1 3.2268 -4.1105 1.4520 22 1 2.4416 -5.5406 0.7370 23 1 -0.0569 -5.7917 4.7966 24 1 -0.7310 -2.5151 0.5232 25 1 0.0622 -1.4043 1.6731 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307166846.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:06 Heat of formation + Delta-G solvation = 46.525635 kcal Electronic energy + Delta-G solvation = -11788.431004 eV Core-core repulsion = 9700.533742 eV Total energy + Delta-G solvation = -2087.897262 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.83598 -37.81181 -34.28987 -31.64242 -31.38157 -27.52030 -25.39978 -24.72219 -22.72292 -19.90957 -19.02528 -18.08556 -16.91056 -16.12255 -16.06333 -15.49198 -15.04577 -14.61902 -14.42803 -13.64436 -13.28301 -13.10783 -12.87471 -12.67727 -12.35720 -12.23425 -11.81335 -11.61325 -10.75862 -10.54055 -10.03778 -9.47819 -8.88179 -7.95930 -5.37561 -0.09392 0.50947 0.91619 1.47436 1.49072 1.58606 1.87862 2.48398 3.22807 3.28044 3.63358 4.10567 4.29744 4.35197 4.54924 4.59463 4.92570 4.96945 5.05614 5.15080 5.41043 5.43452 5.60486 6.25862 6.82902 7.03285 7.71403 8.26676 9.14614 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.045097 B = 0.010666 C = 0.009386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.735799 B = 2624.584907 C = 2982.482666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.264 4.264 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.141 3.859 11 C -0.046 4.046 12 C 0.042 3.958 13 N -0.496 5.496 14 C 0.021 3.979 15 S 0.127 5.873 16 C -0.249 4.249 17 C 0.261 3.739 18 H 0.253 0.747 19 H 0.029 0.971 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.095 0.905 23 H 0.239 0.761 24 H 0.023 0.977 25 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -7.812 6.289 10.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.015 3.985 11 C -0.088 4.088 12 C -0.087 4.087 13 N -0.209 5.209 14 C -0.278 4.278 15 S 0.379 5.621 16 C -0.372 4.372 17 C 0.133 3.867 18 H 0.062 0.938 19 H 0.047 0.953 20 H 0.097 0.903 21 H 0.090 0.910 22 H 0.114 0.886 23 H 0.255 0.745 24 H 0.040 0.960 25 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.736 -7.656 6.808 10.272 hybrid contribution 0.714 0.933 -0.660 1.348 sum -0.022 -6.723 6.149 9.111 Atomic orbital electron populations 1.70129 1.06625 1.26241 1.55443 1.25796 0.96192 1.01548 1.00946 0.85211 0.77937 0.79167 0.77756 1.20747 1.21808 1.19653 1.19558 0.92931 0.85285 1.41612 0.90550 1.44377 1.29667 1.02594 1.56589 1.21075 0.98036 0.85493 0.93862 1.20841 0.94150 1.01305 0.92498 1.21042 0.99069 0.91443 0.97187 1.65941 1.21938 1.28783 1.04277 1.28764 0.94862 1.00820 1.03339 1.83561 1.32725 1.25374 1.20415 1.27363 1.01537 1.04955 1.03305 1.18970 0.88498 0.91626 0.87622 0.93753 0.95285 0.90343 0.90952 0.88632 0.74481 0.95981 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.60 11.08 21.65 0.24 -54.36 15 2 C -0.05 -2.73 5.00 84.87 0.42 -2.31 15 3 Si 0.97 44.28 29.58 68.60 2.03 46.31 15 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 15 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 7 C -0.26 -14.42 9.67 84.03 0.81 -13.61 15 8 H 0.08 4.00 7.88 -2.91 -0.02 3.97 15 9 N -0.61 -31.09 2.99 -701.89 -2.10 -33.19 15 10 C 0.14 5.88 6.42 86.29 0.55 6.43 15 11 C -0.05 -1.71 6.46 30.31 0.20 -1.51 15 12 C 0.04 1.68 6.80 42.06 0.29 1.96 15 13 N -0.50 -17.53 10.51 -189.21 -1.99 -19.52 15 14 C 0.02 0.58 12.23 130.71 1.60 2.18 15 15 S 0.13 4.02 23.21 -56.49 -1.31 2.71 15 16 C -0.25 -10.48 6.49 25.00 0.16 -10.32 15 17 C 0.26 13.06 5.36 85.62 0.46 13.52 15 18 H 0.25 14.23 8.31 -92.71 -0.77 13.46 15 19 H 0.03 1.20 8.14 -2.39 -0.02 1.18 15 20 H 0.08 3.03 7.94 -2.39 -0.02 3.01 15 21 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 22 H 0.10 2.99 8.14 -2.39 -0.02 2.97 15 23 H 0.24 4.15 8.06 -2.91 -0.02 4.13 15 24 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 25 H 0.07 3.70 6.43 -2.39 -0.02 3.68 15 Total: -1.00 -63.68 228.29 2.55 -61.13 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.19 Total: 0.58 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 4.49 Total: -3.65 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -3.85 Total: -107.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.31 Total: 2.71 kcal Total: -63.68 2.55 -61.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307166846.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.652 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds