Wall clock time and date at job start Thu Apr 9 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48699 * 2 1 4 4 C 1.53171 * 109.49639 * 120.05226 * 2 1 3 5 5 C 1.53146 * 109.35547 * 179.18329 * 4 2 1 6 6 N 1.46888 * 109.08237 * 303.60109 * 5 4 2 7 7 C 1.36931 * 120.67754 * 235.26173 * 6 5 4 8 8 H 1.07997 * 120.00241 * 26.98425 * 7 6 5 9 9 C 1.38817 * 119.99989 * 206.97670 * 7 6 5 10 10 N 1.31617 * 119.99711 * 17.12834 * 9 7 6 11 11 Si 1.86798 * 120.00150 * 197.12995 * 9 7 6 12 12 H 1.48501 * 109.46956 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47390 * 120.00224 * 11 9 7 14 14 H 1.48502 * 109.46806 * 240.00291 * 11 9 7 15 15 C 1.47106 * 118.64131 * 55.28567 * 6 5 4 16 16 C 1.52714 * 109.49380 * 239.94446 * 2 1 3 17 17 C 1.53350 * 113.63238 * 51.44286 * 16 2 1 18 18 C 1.53855 * 86.96615 * 220.08401 * 17 16 2 19 19 C 1.53366 * 113.58561 * 313.44222 * 16 2 1 20 20 H 1.08998 * 109.47220 * 299.99895 * 1 2 3 21 21 H 1.08997 * 109.47432 * 60.00289 * 1 2 3 22 22 H 1.09010 * 109.46638 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.49200 * 299.14702 * 4 2 1 24 24 H 1.08997 * 109.48811 * 59.19577 * 4 2 1 25 25 H 1.08998 * 109.53489 * 63.48495 * 5 4 2 26 26 H 1.08998 * 109.53580 * 183.64107 * 5 4 2 27 27 H 0.97002 * 119.99688 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.63776 * 68.19096 * 15 6 5 29 29 H 1.08998 * 109.63788 * 188.60367 * 15 6 5 30 30 H 1.08994 * 113.63177 * 334.60545 * 17 16 2 31 31 H 1.09007 * 113.63226 * 105.56715 * 17 16 2 32 32 H 1.08996 * 113.60722 * 270.55863 * 18 17 16 33 33 H 1.08997 * 113.60617 * 139.68616 * 18 17 16 34 34 H 1.08998 * 113.63655 * 254.47647 * 19 16 2 35 35 H 1.09004 * 113.63139 * 25.35633 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0412 -0.7231 1.2498 5 6 3.5725 -0.7390 1.2363 6 7 4.0352 -1.3659 -0.0090 7 6 4.8870 -2.4376 0.0230 8 1 4.8930 -3.0974 0.8779 9 6 5.7428 -2.6760 -1.0437 10 7 5.9885 -1.7217 -1.9163 11 14 6.5458 -4.3510 -1.2407 12 1 6.1098 -5.2420 -0.1355 13 1 6.1439 -4.9427 -2.5420 14 1 8.0225 -4.1998 -1.2006 15 6 3.5653 -0.8185 -1.2909 16 6 2.0396 -0.7210 -1.2460 17 6 1.4193 -0.2067 -2.5508 18 6 1.3592 -1.6753 -3.0054 19 6 1.3333 -2.0556 -1.5148 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.6908 -0.2016 2.1406 24 1 1.6665 -1.7466 1.2565 25 1 3.9482 0.2827 1.2915 26 1 3.9386 -1.3087 2.0904 27 1 6.5868 -1.8882 -2.6614 28 1 3.9913 0.1730 -1.4441 29 1 3.8694 -1.4775 -2.1041 30 1 0.4386 0.2501 -2.4180 31 1 2.0967 0.4071 -3.1445 32 1 2.2574 -2.0084 -3.5252 33 1 0.4424 -1.9305 -3.5368 34 1 1.9416 -2.9278 -1.2757 35 1 0.3293 -2.1111 -1.0939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307311998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:11 Heat of formation + Delta-G solvation = 30.744557 kcal Electronic energy + Delta-G solvation = -14960.402581 eV Core-core repulsion = 12766.160229 eV Total energy + Delta-G solvation = -2194.242352 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.70188 -35.26499 -33.38552 -30.94018 -28.18113 -27.05089 -25.07124 -23.97362 -22.53475 -20.94151 -19.78240 -17.28729 -16.46526 -15.06697 -14.90292 -14.13366 -13.75960 -13.62253 -13.13813 -12.73295 -12.43897 -12.00929 -11.83258 -11.46340 -11.07328 -10.85945 -10.75449 -10.55722 -10.55173 -10.30636 -10.05776 -9.97427 -9.81295 -9.37384 -9.08014 -8.95806 -8.39560 -6.60022 -5.73377 -3.13374 3.39538 3.47577 3.49698 4.53862 5.19554 5.29764 5.32224 5.45216 5.48239 5.54901 5.72665 5.80507 5.89592 6.10824 6.19289 6.21396 6.28564 6.35938 6.38439 6.49191 6.56549 6.65993 6.69522 6.74899 6.84537 6.97421 7.06343 7.13104 7.24931 7.50701 7.74391 7.86015 8.50562 9.27666 9.91956 10.49444 11.35383 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.012124 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.423137 B = 2308.977325 C = 2677.059277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 H 0.059 0.941 4 C -0.126 4.126 5 C 0.145 3.855 6 N -0.590 5.590 7 C -0.246 4.246 8 H 0.065 0.935 9 C 0.001 3.999 10 N -0.904 5.904 11 Si 0.898 3.102 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.197 3.803 16 C -0.089 4.089 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.129 4.129 20 H 0.043 0.957 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.015 0.985 26 H 0.050 0.950 27 H 0.252 0.748 28 H 0.016 0.984 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.671 2.207 1.015 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 H 0.077 0.923 4 C -0.165 4.165 5 C 0.018 3.982 6 N -0.312 5.312 7 C -0.376 4.376 8 H 0.082 0.918 9 C -0.198 4.198 10 N -0.549 5.549 11 Si 0.728 3.272 12 H -0.203 1.203 13 H -0.216 1.216 14 H -0.218 1.218 15 C 0.071 3.929 16 C -0.091 4.091 17 C -0.176 4.176 18 C -0.176 4.176 19 C -0.166 4.166 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.533 2.182 0.896 9.821 hybrid contribution 0.457 -0.789 -0.192 0.932 sum -9.076 1.393 0.704 9.209 Atomic orbital electron populations 1.22003 0.96812 1.01316 1.00423 1.20827 0.93788 0.98748 0.95546 0.92298 1.22043 0.98834 0.99842 0.95830 1.20865 0.91311 0.95730 0.90253 1.44027 1.52421 1.35107 0.99675 1.19221 1.12580 1.01309 1.04451 0.91755 1.24988 0.97407 0.97608 0.99751 1.70046 1.38182 1.30402 1.16273 0.86279 0.78826 0.84397 0.77670 1.20307 1.21617 1.21818 1.20562 0.85095 0.97449 0.89764 1.22320 0.99410 0.94982 0.92397 1.22986 1.00177 0.96318 0.98157 1.22778 1.00869 0.96940 0.97023 1.22884 0.99640 0.98840 0.95236 0.93746 0.93021 0.92645 0.93591 0.92428 0.96722 0.93101 0.93796 0.96582 0.89250 0.90898 0.92116 0.90276 0.92971 0.91172 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.41 37.16 0.31 -1.82 16 2 C -0.07 -1.23 2.39 -90.68 -0.22 -1.45 16 3 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 4 C -0.13 -2.29 5.29 -26.57 -0.14 -2.43 16 5 C 0.14 3.15 6.46 -3.76 -0.02 3.12 16 6 N -0.59 -15.03 3.00 -172.39 -0.52 -15.55 16 7 C -0.25 -6.83 9.60 -15.06 -0.14 -6.98 16 8 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 9 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 10 N -0.90 -26.50 11.16 55.49 0.62 -25.88 16 11 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 C 0.20 4.77 4.31 -3.74 -0.02 4.75 16 16 C -0.09 -1.72 0.78 -154.32 -0.12 -1.84 16 17 C -0.14 -2.34 7.03 -26.10 -0.18 -2.52 16 18 C -0.14 -2.37 7.74 -25.84 -0.20 -2.57 16 19 C -0.13 -2.36 6.64 -26.09 -0.17 -2.54 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 21 H 0.05 0.69 6.14 -51.93 -0.32 0.37 16 22 H 0.05 0.79 6.04 -51.92 -0.31 0.48 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.08 7.91 -51.93 -0.41 0.67 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 2.41 5.33 -51.93 -0.28 2.13 16 30 H 0.07 1.09 5.92 -51.93 -0.31 0.78 16 31 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 32 H 0.08 1.48 7.66 -51.93 -0.40 1.08 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 35 H 0.07 1.14 5.70 -51.93 -0.30 0.84 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -28.78 262.50 -7.62 -36.40 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.66 Total: -1.52 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.99 Total: -14.34 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.10 Total: -41.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.78 -7.62 -36.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307311998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.144 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds