Wall clock time and date at job start Thu Apr 9 2020 11:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.48699 * 2 1 4 4 C 1.53171 * 109.49639 * 120.05226 * 2 1 3 5 5 C 1.53146 * 109.35547 * 179.18329 * 4 2 1 6 6 N 1.46888 * 109.08237 * 303.60109 * 5 4 2 7 7 C 1.36931 * 120.67754 * 235.26173 * 6 5 4 8 8 H 1.07997 * 120.00241 * 26.98425 * 7 6 5 9 9 C 1.38817 * 119.99989 * 206.97670 * 7 6 5 10 10 N 1.31617 * 119.99711 * 17.12834 * 9 7 6 11 11 Si 1.86798 * 120.00150 * 197.12995 * 9 7 6 12 12 H 1.48501 * 109.46956 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47390 * 120.00224 * 11 9 7 14 14 H 1.48502 * 109.46806 * 240.00291 * 11 9 7 15 15 C 1.47106 * 118.64131 * 55.28567 * 6 5 4 16 16 C 1.52714 * 109.49380 * 239.94446 * 2 1 3 17 17 C 1.53350 * 113.63238 * 51.44286 * 16 2 1 18 18 C 1.53855 * 86.96615 * 220.08401 * 17 16 2 19 19 C 1.53366 * 113.58561 * 313.44222 * 16 2 1 20 20 H 1.08998 * 109.47220 * 299.99895 * 1 2 3 21 21 H 1.08997 * 109.47432 * 60.00289 * 1 2 3 22 22 H 1.09010 * 109.46638 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.49200 * 299.14702 * 4 2 1 24 24 H 1.08997 * 109.48811 * 59.19577 * 4 2 1 25 25 H 1.08998 * 109.53489 * 63.48495 * 5 4 2 26 26 H 1.08998 * 109.53580 * 183.64107 * 5 4 2 27 27 H 0.97002 * 119.99688 * 179.97438 * 10 9 7 28 28 H 1.08999 * 109.63776 * 68.19096 * 15 6 5 29 29 H 1.08998 * 109.63788 * 188.60367 * 15 6 5 30 30 H 1.08994 * 113.63177 * 334.60545 * 17 16 2 31 31 H 1.09007 * 113.63226 * 105.56715 * 17 16 2 32 32 H 1.08996 * 113.60722 * 270.55863 * 18 17 16 33 33 H 1.08997 * 113.60617 * 139.68616 * 18 17 16 34 34 H 1.08998 * 113.63655 * 254.47647 * 19 16 2 35 35 H 1.09004 * 113.63139 * 25.35633 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0412 -0.7231 1.2498 5 6 3.5725 -0.7390 1.2363 6 7 4.0352 -1.3659 -0.0090 7 6 4.8870 -2.4376 0.0230 8 1 4.8930 -3.0974 0.8779 9 6 5.7428 -2.6760 -1.0437 10 7 5.9885 -1.7217 -1.9163 11 14 6.5458 -4.3510 -1.2407 12 1 6.1098 -5.2420 -0.1355 13 1 6.1439 -4.9427 -2.5420 14 1 8.0225 -4.1998 -1.2006 15 6 3.5653 -0.8185 -1.2909 16 6 2.0396 -0.7210 -1.2460 17 6 1.4193 -0.2067 -2.5508 18 6 1.3592 -1.6753 -3.0054 19 6 1.3333 -2.0556 -1.5148 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 0.0005 23 1 1.6908 -0.2016 2.1406 24 1 1.6665 -1.7466 1.2565 25 1 3.9482 0.2827 1.2915 26 1 3.9386 -1.3087 2.0904 27 1 6.5868 -1.8882 -2.6614 28 1 3.9913 0.1730 -1.4441 29 1 3.8694 -1.4775 -2.1041 30 1 0.4386 0.2501 -2.4180 31 1 2.0967 0.4071 -3.1445 32 1 2.2574 -2.0084 -3.5252 33 1 0.4424 -1.9305 -3.5368 34 1 1.9416 -2.9278 -1.2757 35 1 0.3293 -2.1111 -1.0939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307311998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:10 Heat of formation + Delta-G solvation = 14.846758 kcal Electronic energy + Delta-G solvation = -14961.091962 eV Core-core repulsion = 12766.160229 eV Total energy + Delta-G solvation = -2194.931732 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.22493 -37.04213 -35.06004 -32.83082 -29.84028 -28.80034 -26.50274 -25.78836 -24.13304 -22.59849 -21.35894 -19.10515 -18.21362 -16.85500 -16.49893 -15.84958 -15.45514 -15.24493 -14.84896 -14.32983 -14.01753 -13.58518 -13.39605 -13.07369 -12.81579 -12.59840 -12.34484 -12.24018 -12.08846 -12.02196 -11.80616 -11.67804 -11.46415 -10.91950 -10.71476 -10.52959 -10.37392 -8.66875 -7.87104 -5.30558 1.42733 1.44473 1.55066 2.49792 3.26290 3.63013 3.83956 3.95257 3.97542 4.08110 4.32754 4.35082 4.47950 4.67220 4.71049 4.88450 4.91500 4.93964 5.01055 5.03413 5.13010 5.19061 5.24187 5.26985 5.35018 5.40891 5.45838 5.57729 5.61119 5.78286 5.80833 5.87728 6.39302 7.15394 7.88187 8.40312 9.19346 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036910 B = 0.012124 C = 0.010457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.423137 B = 2308.977325 C = 2677.059277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 H 0.053 0.947 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.608 5.608 7 C -0.256 4.256 8 H 0.064 0.936 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.290 1.290 14 H -0.292 1.292 15 C 0.207 3.793 16 C -0.096 4.096 17 C -0.126 4.126 18 C -0.135 4.135 19 C -0.122 4.122 20 H 0.063 0.937 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.052 0.948 25 H 0.008 0.992 26 H 0.049 0.951 27 H 0.248 0.752 28 H -0.019 1.019 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.180 2.143 1.591 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.154 4.154 5 C 0.012 3.988 6 N -0.331 5.331 7 C -0.387 4.387 8 H 0.081 0.919 9 C -0.247 4.247 10 N -0.583 5.583 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.217 1.217 14 H -0.219 1.219 15 C 0.082 3.918 16 C -0.098 4.098 17 C -0.164 4.164 18 C -0.173 4.173 19 C -0.159 4.159 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.071 0.929 25 H 0.026 0.974 26 H 0.067 0.933 27 H 0.058 0.942 28 H -0.001 1.001 29 H 0.073 0.927 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.063 2.124 1.496 12.339 hybrid contribution 1.292 -0.727 -0.318 1.516 sum -10.771 1.397 1.178 10.925 Atomic orbital electron populations 1.21915 0.93372 1.02123 1.02214 1.20839 0.96515 0.97758 0.93769 0.92893 1.21919 0.95458 1.00244 0.97816 1.21059 0.94256 0.94858 0.88656 1.44302 1.52506 1.35038 1.01254 1.19522 1.12680 1.02051 1.04426 0.91852 1.25730 0.98424 1.00805 0.99691 1.70206 1.39102 1.32213 1.16782 0.85275 0.77554 0.80472 0.77633 1.19096 1.21679 1.21884 1.20289 0.88809 0.94346 0.88404 1.22143 0.95745 0.96767 0.95111 1.22983 1.01270 0.96118 0.96032 1.22716 1.01157 0.96991 0.96389 1.22866 1.00264 0.96504 0.96261 0.91755 0.91558 0.92206 0.90427 0.92879 0.97388 0.93251 0.94249 1.00085 0.92740 0.87446 0.93236 0.93105 0.89673 0.94809 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.41 71.98 0.61 -2.71 16 2 C -0.07 -2.27 2.39 -10.83 -0.03 -2.30 16 3 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.12 -3.95 5.29 30.70 0.16 -3.79 16 5 C 0.14 5.97 6.46 86.35 0.56 6.53 16 6 N -0.61 -31.85 3.00 -699.32 -2.10 -33.95 16 7 C -0.26 -14.63 9.60 84.04 0.81 -13.83 16 8 H 0.06 3.55 7.89 -2.91 -0.02 3.52 16 9 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 10 N -0.94 -57.22 11.16 21.65 0.24 -56.97 16 11 Si 0.96 46.25 29.59 68.60 2.03 48.28 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 14 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 15 C 0.21 10.41 4.31 86.24 0.37 10.79 16 16 C -0.10 -3.62 0.78 -52.06 -0.04 -3.66 16 17 C -0.13 -4.01 7.03 31.00 0.22 -3.80 16 18 C -0.14 -4.41 7.74 31.17 0.24 -4.17 16 19 C -0.12 -4.29 6.64 31.01 0.21 -4.08 16 20 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 1.40 6.14 -2.39 -0.01 1.39 16 22 H 0.06 1.39 6.04 -2.38 -0.01 1.38 16 23 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 24 H 0.05 1.88 7.91 -2.39 -0.02 1.86 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 29 H 0.05 3.10 5.33 -2.39 -0.01 3.08 16 30 H 0.11 2.71 5.92 -2.39 -0.01 2.70 16 31 H 0.05 1.68 8.09 -2.38 -0.02 1.66 16 32 H 0.05 1.93 7.66 -2.39 -0.02 1.92 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 35 H 0.10 2.91 5.70 -2.38 -0.01 2.90 16 Total: -1.00 -64.36 262.50 4.74 -59.62 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.05 Total: 6.59 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.52 Total: -23.57 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.86 Total: -90.92 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -64.36 4.74 -59.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307311998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.469 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds