Wall clock time and date at job start Thu Apr 9 2020 11:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.48999 * 2 1 4 4 C 1.53171 * 109.51780 * 239.93158 * 2 1 3 5 5 C 1.53152 * 109.35231 * 180.83037 * 4 2 1 6 6 N 1.46884 * 109.08347 * 56.39122 * 5 4 2 7 7 C 1.36947 * 120.67678 * 124.74408 * 6 5 4 8 8 H 1.08002 * 120.00043 * 332.68090 * 7 6 5 9 9 C 1.38809 * 119.99852 * 152.67857 * 7 6 5 10 10 N 1.31613 * 120.00381 * 343.27847 * 9 7 6 11 11 Si 1.86808 * 119.99701 * 163.28022 * 9 7 6 12 12 H 1.48500 * 109.47002 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46932 * 120.00280 * 11 9 7 14 14 H 1.48501 * 109.46797 * 240.00056 * 11 9 7 15 15 C 1.47098 * 118.65032 * 304.72300 * 6 5 4 16 16 C 1.52713 * 109.49411 * 120.06260 * 2 1 3 17 17 C 1.53377 * 113.57904 * 46.58671 * 16 2 1 18 18 C 1.53858 * 86.95837 * 220.03426 * 17 16 2 19 19 C 1.53355 * 113.64077 * 308.58811 * 16 2 1 20 20 H 1.08999 * 109.47069 * 299.93703 * 1 2 3 21 21 H 1.09004 * 109.46759 * 59.93762 * 1 2 3 22 22 H 1.08999 * 109.46836 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.49123 * 300.79361 * 4 2 1 24 24 H 1.09005 * 109.48999 * 60.86715 * 4 2 1 25 25 H 1.08999 * 109.53000 * 176.27272 * 5 4 2 26 26 H 1.08993 * 109.53273 * 296.42799 * 5 4 2 27 27 H 0.97000 * 120.00696 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.63727 * 291.81334 * 15 6 5 29 29 H 1.08994 * 109.64775 * 171.18855 * 15 6 5 30 30 H 1.08997 * 113.63288 * 334.54825 * 17 16 2 31 31 H 1.08997 * 113.63658 * 105.51763 * 17 16 2 32 32 H 1.08998 * 113.59717 * 270.55270 * 18 17 16 33 33 H 1.08999 * 113.60435 * 139.68639 * 18 17 16 34 34 H 1.09004 * 113.63123 * 254.42812 * 19 16 2 35 35 H 1.09002 * 113.63140 * 25.29822 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0418 -0.7233 -1.2494 5 6 3.5732 -0.7393 -1.2351 6 7 4.0353 -1.3657 0.0105 7 6 4.8874 -2.4374 -0.0207 8 1 4.8900 -3.1006 -0.8731 9 6 5.7476 -2.6712 1.0432 10 7 5.9905 -1.7160 1.9155 11 14 6.5608 -4.3418 1.2371 12 1 6.1256 -5.2352 0.1335 13 1 8.0365 -4.1822 1.1928 14 1 6.1660 -4.9363 2.5394 15 6 3.5647 -0.8182 1.2921 16 6 2.0397 -0.7212 1.2459 17 6 1.3337 -2.0562 1.5140 18 6 1.3592 -1.6765 3.0048 19 6 1.4189 -0.2077 2.5508 20 1 -0.3633 0.5128 0.8905 21 1 -0.3633 0.5148 -0.8895 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6675 -1.7470 -1.2559 24 1 1.6918 -0.2020 -2.1404 25 1 3.9396 -1.3104 -2.0882 26 1 3.9488 0.2823 -1.2920 27 1 6.5920 -1.8792 2.6588 28 1 3.9904 0.1735 1.4452 29 1 3.8653 -1.4788 2.1053 30 1 0.3293 -2.1113 1.0943 31 1 1.9424 -2.9281 1.2747 32 1 2.2575 -2.0095 3.5245 33 1 0.4424 -1.9322 3.5360 34 1 2.0960 0.4062 3.1449 35 1 0.4387 0.2503 2.4178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307312002.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:12 Heat of formation + Delta-G solvation = 14.747241 kcal Electronic energy + Delta-G solvation = -14960.705488 eV Core-core repulsion = 12765.769440 eV Total energy + Delta-G solvation = -2194.936048 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22819 -37.03946 -35.05859 -32.83152 -29.84124 -28.80038 -26.50288 -25.78868 -24.13099 -22.59893 -21.35861 -19.10477 -18.21224 -16.85556 -16.49894 -15.84906 -15.45417 -15.24400 -14.84918 -14.32998 -14.01775 -13.58342 -13.39437 -13.07390 -12.81557 -12.59939 -12.34447 -12.24105 -12.08897 -12.02119 -11.80686 -11.67823 -11.46471 -10.91741 -10.71585 -10.52799 -10.37612 -8.66333 -7.86998 -5.31041 1.42692 1.44453 1.55057 2.49711 3.26513 3.63096 3.84001 3.95295 3.97523 4.08142 4.32850 4.35130 4.48018 4.67236 4.71142 4.88455 4.91566 4.94001 5.01137 5.03471 5.13024 5.19129 5.24224 5.27085 5.35099 5.40946 5.45816 5.57598 5.61141 5.78331 5.80617 5.87797 6.39499 7.15537 7.88193 8.40362 9.19427 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.036966 B = 0.012109 C = 0.010446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.275093 B = 2311.800243 C = 2679.687607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 H 0.053 0.947 4 C -0.115 4.115 5 C 0.137 3.863 6 N -0.608 5.608 7 C -0.257 4.257 8 H 0.064 0.936 9 C -0.051 4.051 10 N -0.936 5.936 11 Si 0.962 3.038 12 H -0.267 1.267 13 H -0.292 1.292 14 H -0.290 1.290 15 C 0.208 3.792 16 C -0.096 4.096 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.126 4.126 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.008 0.992 27 H 0.248 0.752 28 H -0.019 1.019 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.165 2.133 -1.595 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.071 0.929 4 C -0.154 4.154 5 C 0.012 3.988 6 N -0.331 5.331 7 C -0.387 4.387 8 H 0.081 0.919 9 C -0.246 4.246 10 N -0.583 5.583 11 Si 0.791 3.209 12 H -0.191 1.191 13 H -0.219 1.219 14 H -0.217 1.217 15 C 0.082 3.918 16 C -0.098 4.098 17 C -0.159 4.159 18 C -0.173 4.173 19 C -0.164 4.164 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.096 0.904 25 H 0.067 0.933 26 H 0.026 0.974 27 H 0.058 0.942 28 H -0.001 1.001 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.048 2.113 -1.500 12.324 hybrid contribution 1.295 -0.724 0.320 1.518 sum -10.753 1.389 -1.180 10.907 Atomic orbital electron populations 1.21916 0.93372 1.02122 1.02212 1.20840 0.96512 0.97756 0.93771 0.92894 1.21921 0.95462 1.00238 0.97816 1.21058 0.94254 0.94863 0.88648 1.44301 1.52525 1.35036 1.01248 1.19523 1.12512 1.01983 1.04682 0.91867 1.25737 0.98403 1.00781 0.99691 1.70198 1.38990 1.32236 1.16888 0.85276 0.77590 0.80439 0.77628 1.19089 1.21863 1.21688 1.20269 0.88797 0.94326 0.88395 1.22142 0.95772 0.96766 0.95112 1.22867 1.00255 0.96505 0.96259 1.22717 1.01155 0.96983 0.96400 1.22984 1.01275 0.96114 0.96039 0.91567 0.91747 0.92206 0.92880 0.90428 0.93266 0.97382 0.94242 1.00053 0.92796 0.88194 0.94796 0.93103 0.89675 0.93249 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.42 71.98 0.61 -2.71 16 2 C -0.07 -2.27 2.40 -10.83 -0.03 -2.30 16 3 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.12 -3.95 5.29 30.70 0.16 -3.79 16 5 C 0.14 5.98 6.46 86.36 0.56 6.53 16 6 N -0.61 -31.85 3.00 -699.45 -2.10 -33.95 16 7 C -0.26 -14.65 9.59 84.03 0.81 -13.84 16 8 H 0.06 3.54 7.88 -2.91 -0.02 3.51 16 9 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 10 N -0.94 -57.22 11.17 21.65 0.24 -56.98 16 11 Si 0.96 46.24 29.59 68.60 2.03 48.27 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 14 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 15 C 0.21 10.44 4.30 86.23 0.37 10.82 16 16 C -0.10 -3.63 0.78 -52.07 -0.04 -3.67 16 17 C -0.12 -4.28 6.64 31.01 0.21 -4.08 16 18 C -0.14 -4.42 7.73 31.17 0.24 -4.17 16 19 C -0.13 -4.02 7.03 31.00 0.22 -3.80 16 20 H 0.07 1.40 6.13 -2.39 -0.01 1.39 16 21 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.06 1.39 6.04 -2.39 -0.01 1.38 16 23 H 0.05 1.88 7.90 -2.39 -0.02 1.86 16 24 H 0.08 2.18 8.14 -2.38 -0.02 2.17 16 25 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 29 H 0.05 3.06 5.34 -2.39 -0.01 3.05 16 30 H 0.10 2.91 5.70 -2.39 -0.01 2.90 16 31 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 32 H 0.05 1.93 7.65 -2.39 -0.02 1.92 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.68 8.09 -2.38 -0.02 1.66 16 35 H 0.11 2.71 5.92 -2.39 -0.01 2.70 16 Total: -1.00 -64.35 262.48 4.74 -59.61 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: 1.05 Total: 6.59 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 3.52 Total: -23.54 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -1.86 Total: -90.93 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -64.35 4.74 -59.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307312002.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.359 kcal (2) G-P(sol) polarization free energy of solvation -64.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds