Wall clock time and date at job start Thu Apr 9 2020 11:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 H 1.08996 * 109.47033 * 180.56546 * 3 2 1 5 5 C 1.50696 * 109.47319 * 300.57629 * 3 2 1 6 6 H 1.07999 * 120.00336 * 119.99726 * 5 3 2 7 7 C 1.37879 * 119.99468 * 299.99424 * 5 3 2 8 8 N 1.31514 * 120.00345 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99653 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46954 * 120.00294 * 9 7 5 12 12 H 1.48500 * 109.47144 * 240.00342 * 9 7 5 13 13 N 1.46906 * 109.46767 * 60.57475 * 3 2 1 14 14 C 1.48596 * 111.00209 * 59.73503 * 13 3 2 15 15 C 1.55089 * 103.34139 * 159.37381 * 14 13 3 16 16 C 1.53972 * 102.71083 * 323.16540 * 15 14 13 17 17 C 1.52300 * 121.21537 * 165.60962 * 16 15 14 18 18 C 1.52321 * 121.17552 * 237.60075 * 16 15 14 19 19 C 1.48088 * 110.99810 * 177.20062 * 13 3 2 20 20 H 1.09003 * 109.46737 * 185.41537 * 1 2 3 21 21 H 1.08999 * 109.47275 * 305.40900 * 1 2 3 22 22 H 1.08996 * 109.47148 * 65.41621 * 1 2 3 23 23 H 1.08999 * 109.47291 * 240.00187 * 2 1 3 24 24 H 1.09004 * 109.47497 * 120.00338 * 2 1 3 25 25 H 0.96996 * 120.00225 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.64380 * 277.84178 * 14 13 3 27 27 H 1.08995 * 110.64269 * 40.91394 * 14 13 3 28 28 H 1.08997 * 110.76539 * 204.85818 * 15 14 13 29 29 H 1.09003 * 110.92014 * 81.53683 * 15 14 13 30 30 H 1.08998 * 117.51465 * 218.02654 * 17 16 15 31 31 H 1.08991 * 117.51714 * 3.14431 * 17 16 15 32 32 H 1.08994 * 117.51535 * 356.78576 * 18 16 15 33 33 H 1.08998 * 117.51662 * 141.91452 * 18 16 15 34 34 H 1.08997 * 110.00693 * 333.57965 * 19 13 3 35 35 H 1.09001 * 110.00464 * 94.89031 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0101 5 6 1.5261 2.1571 -1.2232 6 1 0.9061 3.0348 -1.1153 7 6 1.8474 1.6902 -2.4801 8 7 2.6020 0.6211 -2.6115 9 14 1.2110 2.5764 -3.9965 10 1 0.3907 3.7423 -3.5806 11 1 2.3586 3.0454 -4.8138 12 1 0.3781 1.6461 -4.8004 13 7 1.5616 2.1310 1.2064 14 6 2.0445 1.4493 2.4353 15 6 1.9272 2.5481 3.5236 16 6 2.3186 3.8257 2.7586 17 6 2.0391 5.2075 3.3348 18 6 3.4787 4.6976 3.2214 19 6 2.0914 3.5122 1.2745 20 1 -0.3633 -1.0231 0.0970 21 1 -0.3634 0.5954 0.8376 22 1 -0.3633 0.4275 -0.9345 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.8284 0.2929 -3.4957 26 1 1.4080 0.5984 2.6781 27 1 3.0812 1.1341 2.3178 28 1 2.6231 2.3585 4.3408 29 1 0.9054 2.6189 3.8966 30 1 1.7253 5.9880 2.6416 31 1 1.5998 5.2583 4.3309 32 1 3.9862 4.4129 4.1430 33 1 4.1116 5.1427 2.4537 34 1 3.0341 3.5772 0.7311 35 1 1.3687 4.2100 0.8517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307381735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:13 Heat of formation + Delta-G solvation = 23.050402 kcal Electronic energy + Delta-G solvation = -14451.065701 eV Core-core repulsion = 12256.489705 eV Total energy + Delta-G solvation = -2194.575996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.97345 -35.90717 -33.07262 -31.00422 -29.23742 -26.32522 -25.56448 -22.92981 -22.24413 -21.28048 -18.97748 -18.43222 -16.03495 -15.32375 -15.10174 -14.34098 -14.03984 -13.41319 -13.21912 -12.60449 -12.11316 -11.99843 -11.79030 -11.42485 -11.20342 -11.03016 -10.91173 -10.58909 -10.52116 -10.25846 -10.00177 -9.87351 -9.64234 -9.37649 -9.22122 -8.78345 -8.38192 -7.18566 -5.97352 -4.00380 3.31013 3.39191 3.43770 4.04825 4.44004 4.82761 4.93963 5.18151 5.33055 5.34901 5.48935 5.81390 5.83385 5.92040 6.02524 6.18283 6.32754 6.38132 6.43887 6.48997 6.58572 6.59709 6.69650 6.76374 6.83589 7.16467 7.29785 7.44323 7.65807 7.75822 7.88022 8.16545 8.37992 8.60431 9.05470 9.63551 11.09358 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.010192 C = 0.008660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.838982 B = 2746.669979 C = 3232.556669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C 0.207 3.793 4 H -0.002 1.002 5 C -0.493 4.493 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.506 5.506 14 C 0.038 3.962 15 C -0.087 4.087 16 C -0.134 4.134 17 C -0.169 4.169 18 C -0.175 4.175 19 C 0.089 3.911 20 H 0.014 0.986 21 H 0.046 0.954 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.012 0.988 25 H 0.259 0.741 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 4.004 9.436 10.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.101 3.899 4 H 0.016 0.984 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.231 5.231 14 C -0.090 4.090 15 C -0.125 4.125 16 C -0.135 4.135 17 C -0.207 4.207 18 C -0.212 4.212 19 C -0.039 4.039 20 H 0.033 0.967 21 H 0.065 0.935 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.721 3.873 9.233 10.039 hybrid contribution 0.671 0.406 -0.918 1.207 sum -0.050 4.279 8.315 9.352 Atomic orbital electron populations 1.21459 0.97284 0.97208 1.01846 1.21526 0.95250 0.98062 0.99960 1.19477 0.92867 0.91206 0.86345 0.98425 1.21077 1.30752 1.11750 0.89601 0.92119 1.24906 0.95301 0.95126 0.98876 1.69890 1.37442 1.23085 1.22884 0.86530 0.78590 0.79768 0.83091 1.19770 1.21251 1.21069 1.64908 1.55154 1.00722 1.02290 1.23112 0.98038 0.96567 0.91319 1.21996 1.00766 0.92986 0.96710 1.21979 1.02094 0.91878 0.97508 1.22827 0.98670 0.97306 1.01859 1.22931 0.91218 1.04415 1.02619 1.22025 0.98643 0.92812 0.90411 0.96686 0.93493 0.92687 0.89153 0.96902 0.93130 0.90936 0.94838 0.92227 0.91011 0.88935 0.89269 0.89304 0.88983 0.93773 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.47 37.16 0.35 -2.37 16 2 C -0.11 -2.66 5.21 -26.73 -0.14 -2.80 16 3 C 0.21 5.24 1.45 -68.86 -0.10 5.14 16 4 H 0.00 -0.05 7.99 -51.93 -0.42 -0.47 16 5 C -0.49 -13.41 6.94 -34.44 -0.24 -13.65 16 6 H 0.06 1.68 7.44 -52.49 -0.39 1.29 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.44 11.32 55.43 0.63 -24.82 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.51 -11.04 4.27 -223.96 -0.96 -11.99 16 14 C 0.04 0.71 5.40 -1.78 -0.01 0.70 16 15 C -0.09 -1.36 6.83 -25.12 -0.17 -1.53 16 16 C -0.13 -2.17 2.45 -154.51 -0.38 -2.55 16 17 C -0.17 -2.30 10.29 -27.01 -0.28 -2.57 16 18 C -0.17 -2.41 10.27 -27.00 -0.28 -2.69 16 19 C 0.09 1.80 5.58 -2.97 -0.02 1.78 16 20 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 21 H 0.05 1.02 7.46 -51.93 -0.39 0.63 16 22 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 23 H 0.09 2.44 6.08 -51.93 -0.32 2.12 16 24 H 0.01 0.28 6.91 -51.93 -0.36 -0.08 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 27 H 0.03 0.65 7.99 -51.93 -0.42 0.23 16 28 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.96 7.70 -51.93 -0.40 0.56 16 35 H 0.07 1.46 8.00 -51.93 -0.42 1.04 16 LS Contribution 275.59 15.07 4.15 4.15 Total: -1.00 -27.93 275.59 -8.52 -36.45 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.97 Total: -1.19 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -1.35 Total: -19.02 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.33 Total: -36.81 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.93 -8.52 -36.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307381735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.503 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds