Wall clock time and date at job start Thu Apr 9 2020 11:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 H 1.08996 * 109.47033 * 180.56546 * 3 2 1 5 5 C 1.50696 * 109.47319 * 300.57629 * 3 2 1 6 6 H 1.07999 * 120.00336 * 119.99726 * 5 3 2 7 7 C 1.37879 * 119.99468 * 299.99424 * 5 3 2 8 8 N 1.31514 * 120.00345 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99653 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47080 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46954 * 120.00294 * 9 7 5 12 12 H 1.48500 * 109.47144 * 240.00342 * 9 7 5 13 13 N 1.46906 * 109.46767 * 60.57475 * 3 2 1 14 14 C 1.48596 * 111.00209 * 59.73503 * 13 3 2 15 15 C 1.55089 * 103.34139 * 159.37381 * 14 13 3 16 16 C 1.53972 * 102.71083 * 323.16540 * 15 14 13 17 17 C 1.52300 * 121.21537 * 165.60962 * 16 15 14 18 18 C 1.52321 * 121.17552 * 237.60075 * 16 15 14 19 19 C 1.48088 * 110.99810 * 177.20062 * 13 3 2 20 20 H 1.09003 * 109.46737 * 185.41537 * 1 2 3 21 21 H 1.08999 * 109.47275 * 305.40900 * 1 2 3 22 22 H 1.08996 * 109.47148 * 65.41621 * 1 2 3 23 23 H 1.08999 * 109.47291 * 240.00187 * 2 1 3 24 24 H 1.09004 * 109.47497 * 120.00338 * 2 1 3 25 25 H 0.96996 * 120.00225 * 180.02562 * 8 7 5 26 26 H 1.08999 * 110.64380 * 277.84178 * 14 13 3 27 27 H 1.08995 * 110.64269 * 40.91394 * 14 13 3 28 28 H 1.08997 * 110.76539 * 204.85818 * 15 14 13 29 29 H 1.09003 * 110.92014 * 81.53683 * 15 14 13 30 30 H 1.08998 * 117.51465 * 218.02654 * 17 16 15 31 31 H 1.08991 * 117.51714 * 3.14431 * 17 16 15 32 32 H 1.08994 * 117.51535 * 356.78576 * 18 16 15 33 33 H 1.08998 * 117.51662 * 141.91452 * 18 16 15 34 34 H 1.08997 * 110.00693 * 333.57965 * 19 13 3 35 35 H 1.09001 * 110.00464 * 94.89031 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 -0.0101 5 6 1.5261 2.1571 -1.2232 6 1 0.9061 3.0348 -1.1153 7 6 1.8474 1.6902 -2.4801 8 7 2.6020 0.6211 -2.6115 9 14 1.2110 2.5764 -3.9965 10 1 0.3907 3.7423 -3.5806 11 1 2.3586 3.0454 -4.8138 12 1 0.3781 1.6461 -4.8004 13 7 1.5616 2.1310 1.2064 14 6 2.0445 1.4493 2.4353 15 6 1.9272 2.5481 3.5236 16 6 2.3186 3.8257 2.7586 17 6 2.0391 5.2075 3.3348 18 6 3.4787 4.6976 3.2214 19 6 2.0914 3.5122 1.2745 20 1 -0.3633 -1.0231 0.0970 21 1 -0.3634 0.5954 0.8376 22 1 -0.3633 0.4275 -0.9345 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 2.8284 0.2929 -3.4957 26 1 1.4080 0.5984 2.6781 27 1 3.0812 1.1341 2.3178 28 1 2.6231 2.3585 4.3408 29 1 0.9054 2.6189 3.8966 30 1 1.7253 5.9880 2.6416 31 1 1.5998 5.2583 4.3309 32 1 3.9862 4.4129 4.1430 33 1 4.1116 5.1427 2.4537 34 1 3.0341 3.5772 0.7311 35 1 1.3687 4.2100 0.8517 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307381735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:13 Heat of formation + Delta-G solvation = 7.156959 kcal Electronic energy + Delta-G solvation = -14451.754892 eV Core-core repulsion = 12256.489705 eV Total energy + Delta-G solvation = -2195.265187 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42553 -37.52700 -34.86927 -32.94456 -30.81409 -28.10958 -27.33915 -24.80389 -23.32254 -22.89696 -20.79232 -19.82799 -18.10516 -17.10624 -16.58451 -16.02287 -15.38588 -15.13448 -14.91601 -14.31961 -13.96675 -13.62090 -13.46715 -12.92499 -12.84874 -12.65267 -12.42534 -12.38252 -12.26977 -11.80863 -11.75412 -11.55386 -11.35998 -11.04421 -10.81242 -10.54260 -10.44839 -8.99172 -8.09762 -6.19685 1.38275 1.40596 1.51890 2.41753 2.89016 3.17844 3.44545 3.60469 3.96123 4.02293 4.13811 4.44699 4.55980 4.71626 4.74185 4.77773 4.79201 4.84034 4.87895 5.00001 5.07646 5.15016 5.22755 5.25602 5.29236 5.31169 5.40645 5.48928 5.72107 5.74487 5.85949 6.27680 6.38280 6.67743 6.92702 7.48098 8.96206 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.010192 C = 0.008660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.838982 B = 2746.669979 C = 3232.556669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C 0.215 3.785 4 H -0.045 1.045 5 C -0.503 4.503 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.513 5.513 14 C 0.033 3.967 15 C -0.073 4.073 16 C -0.159 4.159 17 C -0.150 4.150 18 C -0.165 4.165 19 C 0.091 3.909 20 H 0.040 0.960 21 H 0.053 0.947 22 H 0.031 0.969 23 H 0.061 0.939 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.080 0.920 27 H 0.021 0.979 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.013 0.987 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 4.802 11.074 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.144 4.144 3 C 0.108 3.892 4 H -0.028 1.028 5 C -0.541 4.541 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.238 5.238 14 C -0.095 4.095 15 C -0.110 4.110 16 C -0.160 4.160 17 C -0.187 4.187 18 C -0.202 4.202 19 C -0.038 4.038 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.032 0.968 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.474 4.679 10.886 11.940 hybrid contribution 0.939 0.164 -1.411 1.703 sum -0.535 4.843 9.475 10.654 Atomic orbital electron populations 1.21313 0.95632 0.98746 1.00811 1.21403 0.96586 0.97172 0.99233 1.19243 0.90171 0.92191 0.87630 1.02796 1.21239 1.30544 1.11547 0.90799 0.93142 1.25631 0.95511 0.95815 1.01579 1.70018 1.38303 1.24185 1.23478 0.85584 0.78102 0.78787 0.79676 1.19347 1.20846 1.20492 1.64806 1.55186 1.01563 1.02201 1.23210 0.97265 0.97926 0.91069 1.21937 1.02203 0.90871 0.96023 1.21879 1.05526 0.93887 0.94659 1.22937 0.98195 0.94828 1.02704 1.23036 0.91291 1.02776 1.03129 1.21925 0.96563 0.91787 0.93503 0.94123 0.92775 0.95005 0.92092 0.95321 0.93070 0.90213 0.96113 0.89508 0.89914 0.88894 0.86734 0.87014 0.89546 0.96823 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.47 71.98 0.68 -4.11 16 2 C -0.11 -5.20 5.21 30.60 0.16 -5.04 16 3 C 0.22 11.23 1.45 44.17 0.06 11.30 16 4 H -0.05 -2.70 7.99 -2.39 -0.02 -2.72 16 5 C -0.50 -28.16 6.94 25.60 0.18 -27.98 16 6 H 0.05 2.87 7.44 -2.91 -0.02 2.85 16 7 C 0.01 0.73 5.30 84.66 0.45 1.18 16 8 N -0.92 -53.78 11.32 21.45 0.24 -53.53 16 9 Si 0.95 44.60 29.54 68.60 2.03 46.63 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 13 N -0.51 -22.63 4.27 -862.49 -3.69 -26.31 16 14 C 0.03 1.21 5.40 86.69 0.47 1.68 16 15 C -0.07 -2.07 6.83 31.64 0.22 -1.85 16 16 C -0.16 -4.86 2.45 -52.18 -0.13 -4.99 16 17 C -0.15 -3.58 10.29 30.41 0.31 -3.26 16 18 C -0.17 -4.13 10.27 30.42 0.31 -3.82 16 19 C 0.09 3.71 5.58 86.20 0.48 4.19 16 20 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.05 2.30 7.46 -2.39 -0.02 2.28 16 22 H 0.03 1.53 7.40 -2.39 -0.02 1.51 16 23 H 0.06 3.38 6.08 -2.39 -0.01 3.36 16 24 H 0.03 1.28 6.91 -2.38 -0.02 1.26 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.08 2.76 7.66 -2.39 -0.02 2.74 16 27 H 0.02 0.80 7.99 -2.39 -0.02 0.78 16 28 H 0.09 2.02 8.12 -2.39 -0.02 2.00 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.01 0.62 7.70 -2.39 -0.02 0.60 16 35 H 0.06 2.44 8.00 -2.39 -0.02 2.42 16 Total: -1.00 -61.32 275.59 2.81 -58.51 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: 1.03 Total: 7.43 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 3.19 Total: -32.72 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -3.44 Total: -79.85 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -61.32 2.81 -58.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307381735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.663 kcal (2) G-P(sol) polarization free energy of solvation -61.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds