Wall clock time and date at job start Thu Apr 9 2020 11:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.48615 * 110.99703 * 69.87462 * 13 3 2 15 15 C 1.54558 * 104.64263 * 158.72480 * 14 13 3 16 16 C 1.53630 * 104.75408 * 336.24001 * 15 14 13 17 17 C 1.52284 * 121.47054 * 216.30163 * 16 15 14 18 18 C 1.52297 * 121.45307 * 144.06131 * 16 15 14 19 19 C 1.48723 * 110.99978 * 185.46040 * 13 3 2 20 20 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.40975 * 277.51612 * 14 13 3 27 27 H 1.09004 * 110.40381 * 39.93886 * 14 13 3 28 28 H 1.09005 * 110.38112 * 95.05447 * 15 14 13 29 29 H 1.09000 * 110.38539 * 217.30797 * 15 14 13 30 30 H 1.09000 * 117.52060 * 356.60155 * 17 16 15 31 31 H 1.09000 * 117.51396 * 141.73542 * 17 16 15 32 32 H 1.08996 * 117.51945 * 218.30834 * 18 16 15 33 33 H 1.09002 * 117.51483 * 3.42717 * 18 16 15 34 34 H 1.08994 * 110.45468 * 320.26688 * 19 13 3 35 35 H 1.09007 * 110.44981 * 82.81233 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.4102 1.5419 2.4051 15 6 2.3290 2.6358 3.4939 16 6 2.0745 3.9389 2.7211 17 6 2.6899 5.2594 3.1646 18 6 1.1796 5.0350 3.2844 19 6 2.0154 3.5412 1.2373 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.8292 -0.0602 -2.9503 26 1 1.9454 0.6207 2.7566 27 1 3.4479 1.3618 2.1241 28 1 1.5038 2.4317 4.1763 29 1 3.2687 2.6954 4.0430 30 1 3.2736 5.2590 4.0851 31 1 3.0377 5.9392 2.3869 32 1 0.5343 5.5671 2.5855 33 1 0.7702 4.8869 4.2837 34 1 2.9880 3.6826 0.7661 35 1 1.2518 4.1203 0.7179 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307381736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:15 Heat of formation + Delta-G solvation = 22.999686 kcal Electronic energy + Delta-G solvation = -14488.951298 eV Core-core repulsion = 12294.373103 eV Total energy + Delta-G solvation = -2194.578195 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.91167 -35.89528 -32.84471 -31.32561 -29.06944 -26.80494 -25.10551 -22.88198 -22.17068 -21.15443 -19.08651 -18.33956 -16.43906 -15.28073 -14.63872 -14.37002 -14.02907 -13.66506 -12.96962 -12.54753 -12.17707 -12.02892 -11.66575 -11.32536 -11.20686 -10.99502 -10.81296 -10.53343 -10.44550 -10.41183 -9.94061 -9.86826 -9.63869 -9.39607 -9.18563 -9.03833 -8.35496 -7.16498 -5.98859 -4.11511 3.25348 3.34182 3.37279 4.12131 4.39438 4.91318 5.06974 5.23560 5.27474 5.54475 5.58489 5.86985 5.93137 6.05904 6.10158 6.29389 6.38583 6.39455 6.49407 6.51715 6.63567 6.71629 6.73470 6.81972 6.94101 7.11472 7.20648 7.35509 7.60854 7.76249 7.99115 8.16059 8.24964 8.45756 8.99281 9.55260 11.00807 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.011431 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.853465 B = 2448.939258 C = 3061.919251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.201 3.799 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.507 5.507 14 C 0.035 3.965 15 C -0.089 4.089 16 C -0.121 4.121 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.073 3.927 20 H 0.038 0.962 21 H 0.025 0.975 22 H 0.047 0.953 23 H 0.030 0.970 24 H 0.091 0.909 25 H 0.260 0.740 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 4.760 7.947 9.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.146 4.146 3 C 0.094 3.906 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.230 5.230 14 C -0.093 4.093 15 C -0.127 4.127 16 C -0.121 4.121 17 C -0.214 4.214 18 C -0.206 4.206 19 C -0.055 4.055 20 H 0.057 0.943 21 H 0.044 0.956 22 H 0.067 0.933 23 H 0.049 0.951 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.793 4.561 7.798 9.456 hybrid contribution 1.959 0.085 -0.320 1.986 sum -0.834 4.646 7.478 8.843 Atomic orbital electron populations 1.21712 0.98901 0.98386 1.00578 1.21522 0.92215 0.99016 1.01832 1.19400 0.93203 0.91481 0.86517 0.94473 1.21774 0.92838 1.38072 1.05471 0.92110 1.24918 0.97799 0.95062 0.95683 1.69890 1.34680 1.38321 1.09376 0.86636 0.86243 0.77728 0.77992 1.19899 1.20997 1.21034 1.65741 1.51159 1.00996 1.05121 1.23042 0.99200 0.96125 0.90955 1.21832 1.00157 0.93254 0.97440 1.21740 1.03136 0.89895 0.97339 1.22869 0.95766 1.00176 1.02610 1.22855 0.92857 1.03178 1.01758 1.22375 1.00056 0.91654 0.91432 0.94274 0.95623 0.93346 0.95089 0.89045 0.92962 0.91837 0.91703 0.92046 0.92321 0.89361 0.89085 0.89122 0.89429 0.92308 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.80 37.16 0.36 -2.53 16 2 C -0.11 -2.58 5.25 -26.73 -0.14 -2.72 16 3 C 0.20 5.00 1.75 -68.86 -0.12 4.88 16 4 H 0.04 1.03 8.13 -51.93 -0.42 0.61 16 5 C -0.54 -14.42 6.56 -34.44 -0.23 -14.65 16 6 H 0.06 1.62 5.68 -52.48 -0.30 1.33 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.85 11.29 55.43 0.63 -24.22 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.51 -10.99 4.81 -223.51 -1.08 -12.07 16 14 C 0.04 0.70 5.49 -2.06 -0.01 0.69 16 15 C -0.09 -1.49 6.77 -25.59 -0.17 -1.66 16 16 C -0.12 -2.02 2.52 -154.52 -0.39 -2.41 16 17 C -0.18 -2.50 10.29 -27.02 -0.28 -2.78 16 18 C -0.17 -2.38 10.27 -27.01 -0.28 -2.66 16 19 C 0.07 1.47 6.10 -2.43 -0.01 1.45 16 20 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 23 H 0.03 0.73 7.06 -51.93 -0.37 0.36 16 24 H 0.09 2.44 5.95 -51.93 -0.31 2.14 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.06 1.24 7.65 -51.93 -0.40 0.84 16 27 H 0.06 1.44 5.50 -51.93 -0.29 1.15 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 1.30 6.68 -51.93 -0.35 0.95 16 35 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 273.01 15.07 4.11 4.11 Total: -1.00 -27.17 273.01 -8.48 -35.65 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.77 Total: 1.14 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -1.36 Total: -20.64 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.45 Total: -36.29 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.17 -8.48 -35.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307381736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.648 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds