Wall clock time and date at job start Thu Apr 9 2020 11:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.50699 * 109.47337 * 185.00273 * 3 2 1 6 6 H 1.08005 * 119.99768 * 239.99676 * 5 3 2 7 7 C 1.37873 * 120.00204 * 59.99898 * 5 3 2 8 8 N 1.31519 * 120.00018 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.46789 * 120.00056 * 9 7 5 12 12 H 1.48496 * 109.47355 * 240.00001 * 9 7 5 13 13 N 1.46905 * 109.47150 * 64.99960 * 3 2 1 14 14 C 1.48615 * 110.99703 * 69.87462 * 13 3 2 15 15 C 1.54558 * 104.64263 * 158.72480 * 14 13 3 16 16 C 1.53630 * 104.75408 * 336.24001 * 15 14 13 17 17 C 1.52284 * 121.47054 * 216.30163 * 16 15 14 18 18 C 1.52297 * 121.45307 * 144.06131 * 16 15 14 19 19 C 1.48723 * 110.99978 * 185.46040 * 13 3 2 20 20 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 0.96993 * 120.00193 * 179.97438 * 8 7 5 26 26 H 1.08998 * 110.40975 * 277.51612 * 14 13 3 27 27 H 1.09004 * 110.40381 * 39.93886 * 14 13 3 28 28 H 1.09005 * 110.38112 * 95.05447 * 15 14 13 29 29 H 1.09000 * 110.38539 * 217.30797 * 15 14 13 30 30 H 1.09000 * 117.52060 * 356.60155 * 17 16 15 31 31 H 1.09000 * 117.51396 * 141.73542 * 17 16 15 32 32 H 1.08996 * 117.51945 * 218.30834 * 18 16 15 33 33 H 1.09002 * 117.51483 * 3.42717 * 18 16 15 34 34 H 1.08994 * 110.45468 * 320.26688 * 19 13 3 35 35 H 1.09007 * 110.44981 * 82.81233 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0048 0.8815 -1.3819 10 1 6.5987 1.5465 -0.1944 11 1 6.4970 -0.5173 -1.4631 12 1 6.3988 1.6169 -2.6103 13 7 1.6513 2.0993 1.2553 14 6 2.4102 1.5419 2.4051 15 6 2.3290 2.6358 3.4939 16 6 2.0745 3.9389 2.7211 17 6 2.6899 5.2594 3.1646 18 6 1.1796 5.0350 3.2844 19 6 2.0154 3.5412 1.2373 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 3.8292 -0.0602 -2.9503 26 1 1.9454 0.6207 2.7566 27 1 3.4479 1.3618 2.1241 28 1 1.5038 2.4317 4.1763 29 1 3.2687 2.6954 4.0430 30 1 3.2736 5.2590 4.0851 31 1 3.0377 5.9392 2.3869 32 1 0.5343 5.5671 2.5855 33 1 0.7702 4.8869 4.2837 34 1 2.9880 3.6826 0.7661 35 1 1.2518 4.1203 0.7179 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307381736.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:15 Heat of formation + Delta-G solvation = 7.548082 kcal Electronic energy + Delta-G solvation = -14489.621330 eV Core-core repulsion = 12294.373103 eV Total energy + Delta-G solvation = -2195.248227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40760 -37.49551 -34.65872 -33.21234 -30.65013 -28.61665 -26.84060 -24.69991 -23.26594 -22.84540 -20.91778 -19.76019 -18.40848 -17.11450 -16.10917 -16.03628 -15.52570 -15.20354 -14.81627 -14.25625 -13.89078 -13.59466 -13.30761 -13.18278 -12.88445 -12.52540 -12.39928 -12.25172 -12.08225 -11.88745 -11.76152 -11.59730 -11.30935 -11.15711 -10.90529 -10.46665 -10.41002 -9.00602 -8.05004 -6.26029 1.34929 1.37883 1.47603 2.38978 2.92582 3.13840 3.60527 3.65169 3.98620 4.10379 4.22390 4.52316 4.57818 4.72307 4.76454 4.82752 4.85272 4.90606 4.98708 5.04378 5.13140 5.18368 5.20505 5.31804 5.35469 5.36799 5.41792 5.49089 5.62575 5.76715 6.04446 6.16355 6.36396 6.50419 6.95340 7.43707 8.91598 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.011431 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.853465 B = 2448.939258 C = 3061.919251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.207 3.793 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.507 5.507 14 C 0.034 3.966 15 C -0.078 4.078 16 C -0.146 4.146 17 C -0.165 4.165 18 C -0.151 4.151 19 C 0.073 3.927 20 H 0.031 0.969 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.029 0.971 24 H 0.062 0.938 25 H 0.261 0.739 26 H 0.066 0.934 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.029 0.971 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 5.534 9.844 11.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.100 3.900 4 H 0.017 0.983 5 C -0.587 4.587 6 H 0.073 0.927 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.231 5.231 14 C -0.095 4.095 15 C -0.115 4.115 16 C -0.147 4.147 17 C -0.202 4.202 18 C -0.188 4.188 19 C -0.055 4.055 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.047 0.953 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.820 5.343 9.708 11.435 hybrid contribution 1.939 -0.129 -0.918 2.149 sum -0.881 5.214 8.791 10.259 Atomic orbital electron populations 1.21571 0.96339 0.99857 1.00583 1.21372 0.94476 0.98020 1.00239 1.19168 0.92153 0.91775 0.86953 0.98259 1.21984 0.93883 1.37578 1.05284 0.92696 1.25639 1.01897 0.94977 0.95531 1.70015 1.36227 1.39046 1.09797 0.85673 0.81340 0.77747 0.77887 1.19531 1.20555 1.20771 1.65658 1.51275 1.01938 1.04182 1.23039 0.97252 0.97706 0.91456 1.21753 1.01707 0.91685 0.96404 1.21649 1.07109 0.91229 0.94721 1.22979 0.96396 0.97652 1.03163 1.22963 0.92862 1.00399 1.02541 1.22316 0.98252 0.90721 0.94250 0.94934 0.93403 0.92555 0.95200 0.91934 0.92948 0.91554 0.94361 0.90207 0.90868 0.87405 0.89035 0.88744 0.87294 0.95303 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 9.80 71.98 0.71 -4.51 16 2 C -0.10 -5.02 5.25 30.59 0.16 -4.86 16 3 C 0.21 10.63 1.75 44.17 0.08 10.71 16 4 H 0.00 -0.03 8.13 -2.39 -0.02 -0.05 16 5 C -0.55 -29.95 6.56 25.60 0.17 -29.78 16 6 H 0.06 3.01 5.68 -2.91 -0.02 3.00 16 7 C 0.02 1.07 5.29 84.65 0.45 1.51 16 8 N -0.91 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.51 -22.16 4.81 -861.04 -4.14 -26.30 16 14 C 0.03 1.33 5.49 86.50 0.48 1.81 16 15 C -0.08 -2.41 6.77 31.34 0.21 -2.20 16 16 C -0.15 -4.59 2.52 -52.19 -0.13 -4.72 16 17 C -0.16 -4.15 10.29 30.41 0.31 -3.84 16 18 C -0.15 -3.70 10.27 30.41 0.31 -3.39 16 19 C 0.07 2.94 6.10 86.20 0.53 3.46 16 20 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 23 H 0.03 1.42 7.06 -2.39 -0.02 1.41 16 24 H 0.06 3.44 5.95 -2.39 -0.01 3.42 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.07 2.54 7.65 -2.39 -0.02 2.52 16 27 H 0.04 1.71 5.50 -2.38 -0.01 1.70 16 28 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.11 2.32 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.03 1.31 6.68 -2.39 -0.02 1.30 16 35 H 0.06 2.37 8.12 -2.38 -0.02 2.35 16 Total: -1.00 -59.00 273.01 2.43 -56.57 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.04 Total: 12.01 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.27 Total: -35.81 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.90 Total: -78.64 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -59.00 2.43 -56.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307381736.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.118 kcal (2) G-P(sol) polarization free energy of solvation -59.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds