Wall clock time and date at job start Thu Apr 9 2020 11:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48501 * 109.47222 * 270.00050 * 3 2 1 5 5 H 1.48509 * 109.46929 * 29.99974 * 3 2 1 6 6 H 1.48495 * 109.47354 * 149.99588 * 3 2 1 7 7 C 1.37881 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.46847 * 110.99897 * 293.95217 * 10 9 7 12 12 C 1.53034 * 109.51345 * 174.16738 * 11 10 9 13 13 C 1.53099 * 109.29509 * 59.18740 * 12 11 10 14 14 C 1.53126 * 109.15071 * 302.33888 * 13 12 11 15 15 H 1.08996 * 109.53423 * 297.69425 * 14 13 12 16 16 C 1.52992 * 109.49999 * 177.59266 * 14 13 12 17 17 C 1.53006 * 117.49896 * 128.82146 * 16 14 13 18 18 C 1.53002 * 117.50070 * 60.19884 * 16 14 13 19 19 C 1.46854 * 110.99958 * 169.74356 * 10 9 7 20 20 H 0.97000 * 119.99888 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47403 * 60.00101 * 9 7 2 22 22 H 1.09006 * 109.47355 * 300.00278 * 9 7 2 23 23 H 1.09002 * 109.46481 * 294.17890 * 11 10 9 24 24 H 1.08994 * 109.46283 * 54.15743 * 11 10 9 25 25 H 1.09007 * 109.50453 * 179.12106 * 12 11 10 26 26 H 1.09009 * 109.50412 * 299.23146 * 12 11 10 27 27 H 1.08990 * 109.52931 * 182.43636 * 13 12 11 28 28 H 1.09002 * 109.57693 * 62.27167 * 13 12 11 29 29 H 1.09002 * 115.55104 * 274.52257 * 16 14 13 30 30 H 1.09002 * 117.49351 * 359.97438 * 17 16 14 31 31 H 1.09001 * 117.49984 * 145.01776 * 17 16 14 32 32 H 1.09001 * 117.49507 * 214.97674 * 18 16 14 33 33 H 1.09000 * 117.49947 * 359.97438 * 18 16 14 34 34 H 1.08993 * 109.46229 * 305.85774 * 19 10 9 35 35 H 1.09008 * 109.45822 * 65.82829 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9706 -3.6541 -1.2534 12 6 4.0505 -4.7343 -1.1601 13 6 3.3885 -6.0906 -0.9032 14 6 2.5591 -6.0095 0.3814 15 1 3.2145 -5.7954 1.2255 16 6 1.8457 -7.3428 0.6138 17 6 1.9970 -7.9946 1.9898 18 6 2.7159 -8.5905 0.7778 19 6 1.5221 -4.8924 0.2436 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.2997 -3.8818 -2.0818 24 1 3.4399 -2.6849 -1.4221 25 1 4.6082 -4.7732 -2.0959 26 1 4.7300 -4.4998 -0.3405 27 1 4.1567 -6.8559 -0.7930 28 1 2.7389 -6.3445 -1.7408 29 1 0.8895 -7.4596 0.1037 30 1 2.6051 -7.4735 2.7293 31 1 1.1402 -8.5402 2.3852 32 1 2.3321 -9.5282 0.3758 33 1 3.7967 -8.4615 0.7197 34 1 0.9393 -4.8225 1.1619 35 1 0.8581 -5.1144 -0.5919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307413637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:18 Heat of formation + Delta-G solvation = 8.309484 kcal Electronic energy + Delta-G solvation = -14000.990127 eV Core-core repulsion = 11805.774917 eV Total energy + Delta-G solvation = -2195.215210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.89984 -36.51200 -33.29397 -31.69574 -30.14107 -26.91269 -24.03662 -22.96266 -22.24279 -21.42877 -19.79687 -19.15713 -16.31862 -15.71398 -14.90983 -14.41196 -14.20293 -13.93875 -13.29338 -13.15091 -12.93749 -12.24621 -11.90279 -11.51400 -11.46936 -11.17397 -10.78058 -10.69980 -10.61576 -10.49738 -10.22259 -10.14912 -10.00884 -9.71123 -9.37776 -9.07893 -8.40574 -7.14829 -5.99570 -4.00692 3.33627 3.39640 3.44345 3.89241 4.44297 4.67265 5.00287 5.02338 5.16788 5.28134 5.36072 5.45525 5.52659 5.65798 5.71924 5.87938 5.98558 6.00928 6.08840 6.17011 6.21596 6.33358 6.33743 6.39282 6.54816 6.66838 6.82905 6.85633 7.36927 7.40996 7.85037 8.15647 8.28720 8.61945 9.07377 9.63379 11.11401 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.054100 B = 0.006918 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.435404 B = 4046.603911 C = 4332.123906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.537 5.537 11 C 0.064 3.936 12 C -0.118 4.118 13 C -0.108 4.108 14 C -0.053 4.053 15 H 0.075 0.925 16 C -0.142 4.142 17 C -0.181 4.181 18 C -0.182 4.182 19 C 0.065 3.935 20 H 0.261 0.739 21 H -0.011 1.011 22 H 0.029 0.971 23 H 0.017 0.983 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -13.457 -0.269 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.262 5.262 11 C -0.064 4.064 12 C -0.156 4.156 13 C -0.146 4.146 14 C -0.072 4.072 15 H 0.094 0.906 16 C -0.161 4.161 17 C -0.218 4.218 18 C -0.219 4.219 19 C -0.064 4.064 20 H 0.070 0.930 21 H 0.007 0.993 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.182 -13.239 0.119 14.218 hybrid contribution -0.320 0.775 -0.659 1.066 sum 4.862 -12.464 -0.540 13.390 Atomic orbital electron populations 1.69965 1.06074 1.26708 1.51205 1.24997 0.94859 0.99302 0.95525 0.86505 0.79824 0.83136 0.78001 1.20768 1.21275 1.19772 1.21182 0.93499 0.89975 1.49785 0.91867 1.19700 0.90089 0.87410 0.95993 1.61995 1.28055 1.02628 1.33532 1.21933 0.94968 0.98938 0.90580 1.21639 0.98321 0.94720 1.00930 1.21552 0.98549 0.97159 0.97306 1.20784 0.96620 0.91534 0.98267 0.90642 1.22350 1.00427 0.93499 0.99791 1.22991 1.02936 1.04291 0.91557 1.22893 0.98863 0.97135 1.03034 1.21980 0.94497 0.90027 0.99855 0.92972 0.99279 0.95259 0.96497 0.90024 0.92528 0.91591 0.92681 0.92680 0.88192 0.88782 0.89245 0.89341 0.88958 0.91527 0.96253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.47 8.43 -34.44 -0.29 -14.76 16 8 H 0.06 1.79 7.14 -52.49 -0.37 1.41 16 9 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 10 N -0.54 -12.00 4.65 -236.11 -1.10 -13.09 16 11 C 0.06 1.29 5.30 -3.84 -0.02 1.27 16 12 C -0.12 -1.89 6.09 -26.66 -0.16 -2.05 16 13 C -0.11 -1.55 5.09 -26.62 -0.14 -1.69 16 14 C -0.05 -0.81 2.50 -90.54 -0.23 -1.04 16 15 H 0.08 1.21 7.90 -51.93 -0.41 0.80 16 16 C -0.14 -1.83 5.15 -90.62 -0.47 -2.29 16 17 C -0.18 -2.07 10.18 -26.73 -0.27 -2.34 16 18 C -0.18 -1.98 9.77 -26.73 -0.26 -2.24 16 19 C 0.07 1.23 4.73 -3.83 -0.02 1.21 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 22 H 0.03 0.84 7.98 -51.93 -0.41 0.42 16 23 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.08 1.77 6.72 -51.93 -0.35 1.42 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.08 8.14 -51.92 -0.42 0.65 16 27 H 0.05 0.69 7.40 -51.93 -0.38 0.31 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 30 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.98 7.65 -51.93 -0.40 0.58 16 34 H 0.07 1.28 8.01 -51.93 -0.42 0.86 16 35 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -29.64 278.59 -9.26 -38.90 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -6.10 Total: -3.13 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -1.97 Total: -17.32 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.36 Total: -39.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.64 -9.26 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307413637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.208 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds