Wall clock time and date at job start Thu Apr 9 2020 11:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48501 * 109.47222 * 270.00050 * 3 2 1 5 5 H 1.48509 * 109.46929 * 29.99974 * 3 2 1 6 6 H 1.48495 * 109.47354 * 149.99588 * 3 2 1 7 7 C 1.37881 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99815 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.46847 * 110.99897 * 293.95217 * 10 9 7 12 12 C 1.53034 * 109.51345 * 174.16738 * 11 10 9 13 13 C 1.53099 * 109.29509 * 59.18740 * 12 11 10 14 14 C 1.53126 * 109.15071 * 302.33888 * 13 12 11 15 15 H 1.08996 * 109.53423 * 297.69425 * 14 13 12 16 16 C 1.52992 * 109.49999 * 177.59266 * 14 13 12 17 17 C 1.53006 * 117.49896 * 128.82146 * 16 14 13 18 18 C 1.53002 * 117.50070 * 60.19884 * 16 14 13 19 19 C 1.46854 * 110.99958 * 169.74356 * 10 9 7 20 20 H 0.97000 * 119.99888 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47403 * 60.00101 * 9 7 2 22 22 H 1.09006 * 109.47355 * 300.00278 * 9 7 2 23 23 H 1.09002 * 109.46481 * 294.17890 * 11 10 9 24 24 H 1.08994 * 109.46283 * 54.15743 * 11 10 9 25 25 H 1.09007 * 109.50453 * 179.12106 * 12 11 10 26 26 H 1.09009 * 109.50412 * 299.23146 * 12 11 10 27 27 H 1.08990 * 109.52931 * 182.43636 * 13 12 11 28 28 H 1.09002 * 109.57693 * 62.27167 * 13 12 11 29 29 H 1.09002 * 115.55104 * 274.52257 * 16 14 13 30 30 H 1.09002 * 117.49351 * 359.97438 * 17 16 14 31 31 H 1.09001 * 117.49984 * 145.01776 * 17 16 14 32 32 H 1.09001 * 117.49507 * 214.97674 * 18 16 14 33 33 H 1.09000 * 117.49947 * 359.97438 * 18 16 14 34 34 H 1.08993 * 109.46229 * 305.85774 * 19 10 9 35 35 H 1.09008 * 109.45822 * 65.82829 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 2.9706 -3.6541 -1.2534 12 6 4.0505 -4.7343 -1.1601 13 6 3.3885 -6.0906 -0.9032 14 6 2.5591 -6.0095 0.3814 15 1 3.2145 -5.7954 1.2255 16 6 1.8457 -7.3428 0.6138 17 6 1.9970 -7.9946 1.9898 18 6 2.7159 -8.5905 0.7778 19 6 1.5221 -4.8924 0.2436 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5571 0.8897 23 1 2.2997 -3.8818 -2.0818 24 1 3.4399 -2.6849 -1.4221 25 1 4.6082 -4.7732 -2.0959 26 1 4.7300 -4.4998 -0.3405 27 1 4.1567 -6.8559 -0.7930 28 1 2.7389 -6.3445 -1.7408 29 1 0.8895 -7.4596 0.1037 30 1 2.6051 -7.4735 2.7293 31 1 1.1402 -8.5402 2.3852 32 1 2.3321 -9.5282 0.3758 33 1 3.7967 -8.4615 0.7197 34 1 0.9393 -4.8225 1.1619 35 1 0.8581 -5.1144 -0.5919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307413637.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:17 Heat of formation + Delta-G solvation = -9.401198 kcal Electronic energy + Delta-G solvation = -14001.758119 eV Core-core repulsion = 11805.774917 eV Total energy + Delta-G solvation = -2195.983203 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.25809 -37.79475 -35.20851 -33.48674 -31.54669 -28.94560 -25.71005 -24.40161 -23.49484 -22.80884 -21.11780 -20.52504 -18.48996 -17.15444 -16.42426 -16.03301 -15.74388 -15.27783 -14.94465 -14.61639 -14.35295 -13.95510 -13.61492 -13.10223 -12.85959 -12.61752 -12.56743 -12.33754 -12.16304 -11.93008 -11.75718 -11.48857 -11.38501 -11.28462 -10.82282 -10.63316 -10.57000 -9.01465 -8.22032 -6.32906 1.40005 1.42035 1.53904 2.39408 2.95652 3.09853 3.25989 3.84303 3.93973 3.98578 4.14719 4.20059 4.32446 4.45020 4.52517 4.67997 4.71011 4.81542 4.85896 4.92345 4.99314 5.08287 5.11245 5.18661 5.18982 5.28055 5.33650 5.34955 5.42774 5.58179 5.65023 6.04299 6.36360 6.65836 6.83758 7.37101 8.89441 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.054100 B = 0.006918 C = 0.006462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.435404 B = 4046.603911 C = 4332.123906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.545 5.545 11 C 0.062 3.938 12 C -0.110 4.110 13 C -0.103 4.103 14 C -0.043 4.043 15 H 0.069 0.931 16 C -0.160 4.160 17 C -0.182 4.182 18 C -0.161 4.161 19 C 0.064 3.936 20 H 0.265 0.735 21 H -0.042 1.042 22 H 0.001 0.999 23 H 0.009 0.991 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -14.579 -0.424 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.081 3.919 10 N -0.269 5.269 11 C -0.066 4.066 12 C -0.147 4.147 13 C -0.141 4.141 14 C -0.062 4.062 15 H 0.087 0.913 16 C -0.179 4.179 17 C -0.219 4.219 18 C -0.198 4.198 19 C -0.064 4.064 20 H 0.074 0.926 21 H -0.025 1.025 22 H 0.019 0.981 23 H 0.027 0.973 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 7.013 -14.389 -0.038 16.007 hybrid contribution -0.937 1.092 -0.605 1.561 sum 6.076 -13.297 -0.643 14.633 Atomic orbital electron populations 1.70099 1.07856 1.27980 1.51769 1.25975 0.95782 1.03386 0.94678 0.85327 0.78526 0.77926 0.78507 1.19660 1.20614 1.18815 1.21465 0.93624 0.91017 1.50139 0.91839 1.19362 0.90177 0.89298 0.93069 1.61956 1.27141 1.02881 1.34922 1.21990 0.95640 0.99726 0.89207 1.21596 0.96850 0.93910 1.02368 1.21552 0.99064 0.96849 0.96611 1.20659 0.95516 0.91258 0.98738 0.91293 1.22207 1.00953 0.93186 1.01545 1.23076 1.03548 1.04104 0.91197 1.22987 0.98983 0.96385 1.01438 1.22076 0.95630 0.89816 0.98902 0.92629 1.02485 0.98129 0.97276 0.92195 0.89854 0.91689 0.89612 0.92478 0.88434 0.89092 0.88135 0.87590 0.88152 0.92743 0.96855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.52 -30.85 8.43 25.60 0.22 -30.63 16 8 H 0.06 3.65 7.14 -2.91 -0.02 3.63 16 9 C 0.21 11.71 4.72 85.56 0.40 12.12 16 10 N -0.54 -25.07 4.65 -900.91 -4.19 -29.26 16 11 C 0.06 2.54 5.30 86.32 0.46 3.00 16 12 C -0.11 -3.29 6.09 30.64 0.19 -3.10 16 13 C -0.10 -2.70 5.09 30.67 0.16 -2.54 16 14 C -0.04 -1.26 2.50 -10.74 -0.03 -1.29 16 15 H 0.07 2.12 7.90 -2.39 -0.02 2.10 16 16 C -0.16 -3.82 5.15 -10.79 -0.06 -3.88 16 17 C -0.18 -3.77 10.18 30.60 0.31 -3.46 16 18 C -0.16 -2.94 9.77 30.60 0.30 -2.64 16 19 C 0.06 2.48 4.73 86.32 0.41 2.88 16 20 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 21 H -0.04 -2.61 8.12 -2.39 -0.02 -2.63 16 22 H 0.00 0.04 7.98 -2.38 -0.02 0.02 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.06 2.66 6.72 -2.39 -0.02 2.64 16 25 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.09 1.79 7.40 -2.39 -0.02 1.77 16 28 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 2.38 8.11 -2.39 -0.02 2.36 16 30 H 0.09 1.94 8.05 -2.39 -0.02 1.92 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 1.70 7.65 -2.39 -0.02 1.69 16 34 H 0.05 2.19 8.01 -2.39 -0.02 2.17 16 35 H 0.01 0.52 8.14 -2.38 -0.02 0.51 16 Total: -1.00 -65.24 278.59 1.97 -63.27 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.03 Total: 5.59 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 2.82 Total: -29.10 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -3.90 Total: -86.92 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.24 1.97 -63.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307413637.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.868 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds