Wall clock time and date at job start Thu Apr 9 2020 11:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.65080 * 2 1 4 4 C 1.54989 * 110.72908 * 123.16705 * 2 1 3 5 5 C 1.54559 * 104.22576 * 155.89003 * 4 2 1 6 6 C 1.52822 * 106.16413 * 336.52988 * 5 4 2 7 7 C 1.54100 * 111.11307 * 121.93086 * 6 5 4 8 8 C 1.55100 * 101.47224 * 154.69304 * 7 6 5 9 9 N 1.47520 * 104.95261 * 324.05658 * 8 7 6 10 10 C 1.36937 * 125.66776 * 203.92003 * 9 8 7 11 11 H 1.08000 * 120.00428 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.00097 * 0.02562 * 10 9 8 13 13 N 1.31625 * 119.99672 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00328 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47072 * 90.00020 * 14 12 10 16 16 H 1.48490 * 109.47279 * 210.00163 * 14 12 10 17 17 H 1.48504 * 109.46684 * 330.00343 * 14 12 10 18 18 C 1.47292 * 108.66330 * 23.93268 * 9 8 7 19 19 C 1.53225 * 107.73021 * 0.30413 * 6 5 4 20 20 H 1.08999 * 109.46962 * 300.70267 * 1 2 3 21 21 H 1.09001 * 109.47231 * 60.70101 * 1 2 3 22 22 H 1.08997 * 109.47399 * 180.70299 * 1 2 3 23 23 H 1.09001 * 110.47676 * 274.57759 * 4 2 1 24 24 H 1.09001 * 110.48068 * 37.07500 * 4 2 1 25 25 H 1.09007 * 110.11176 * 95.70223 * 5 4 2 26 26 H 1.08997 * 110.11727 * 217.35231 * 5 4 2 27 27 H 1.09002 * 111.02436 * 272.74401 * 7 6 5 28 28 H 1.08997 * 111.02496 * 36.64749 * 7 6 5 29 29 H 1.08999 * 110.34523 * 205.18129 * 8 7 6 30 30 H 1.09007 * 110.34399 * 82.92358 * 8 7 6 31 31 H 0.96995 * 119.99413 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.96111 * 238.82552 * 18 9 8 33 33 H 1.08997 * 109.95869 * 117.59470 * 18 9 8 34 34 H 1.08997 * 110.53855 * 264.31553 * 19 6 5 35 35 H 1.08998 * 110.54141 * 141.52410 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0786 -0.7930 1.2134 5 6 3.4920 -1.2349 0.7708 6 6 3.4782 -1.2363 -0.7574 7 6 4.5619 -0.2980 -1.3231 8 6 4.8167 -0.9267 -2.7179 9 7 4.6842 -2.3811 -2.5098 10 6 5.2504 -3.3541 -3.2895 11 1 5.0924 -4.3959 -3.0526 12 6 6.0276 -3.0014 -4.3843 13 7 6.2206 -1.7318 -4.6726 14 14 6.7995 -4.3287 -5.4482 15 1 5.8641 -4.6917 -6.5430 16 1 8.0685 -3.8217 -6.0292 17 1 7.0793 -5.5279 -4.6182 18 6 3.8414 -2.6128 -1.3243 19 6 2.0830 -0.7953 -1.2119 20 1 -0.3633 0.5247 0.8836 21 1 -0.3634 0.5029 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 2.1373 -0.1519 2.0929 24 1 1.4516 -1.6612 1.4166 25 1 4.2375 -0.5295 1.1383 26 1 3.7061 -2.2361 1.1446 27 1 4.1870 0.7213 -1.4161 28 1 5.4630 -0.3271 -0.7105 29 1 5.8208 -0.6835 -3.0655 30 1 4.0722 -0.5768 -3.4331 31 1 6.7634 -1.4854 -5.4379 32 1 4.3943 -3.1872 -0.5811 33 1 2.9359 -3.1480 -1.6104 34 1 1.4561 -1.6628 -1.4182 35 1 2.1518 -0.1542 -2.0907 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307533039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:23 Heat of formation + Delta-G solvation = 3.421870 kcal Electronic energy + Delta-G solvation = -14431.095562 eV Core-core repulsion = 12235.668409 eV Total energy + Delta-G solvation = -2195.427153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.28658 -35.56399 -32.42698 -30.36365 -29.05403 -27.72459 -25.89052 -24.42748 -22.01639 -20.45306 -19.40360 -18.23098 -16.68142 -15.51335 -14.61995 -14.36937 -13.54369 -13.49282 -13.37191 -12.88182 -12.73237 -11.85980 -11.72554 -11.44151 -11.17533 -11.03184 -10.79727 -10.72941 -10.59876 -10.33044 -10.20716 -10.07585 -9.77326 -9.67557 -9.58217 -9.24765 -8.56999 -6.73124 -5.57746 -2.98502 3.43761 3.48358 3.50594 4.55256 4.83887 4.98035 4.99336 5.44165 5.51616 5.57658 5.69736 5.71023 5.77931 5.84265 5.94051 6.00166 6.12134 6.21138 6.23956 6.30785 6.36731 6.47291 6.55791 6.60804 6.68940 6.72545 6.87241 6.97426 7.11040 7.62304 7.70857 7.94868 8.44744 9.30289 9.91452 10.58465 11.46082 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.062021 B = 0.007732 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.350056 B = 3620.654960 C = 3650.660447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.074 4.074 7 C -0.133 4.133 8 C 0.154 3.846 9 N -0.605 5.605 10 C -0.219 4.219 11 H 0.076 0.924 12 C -0.014 4.014 13 N -0.923 5.923 14 Si 0.913 3.087 15 H -0.290 1.290 16 H -0.291 1.291 17 H -0.282 1.282 18 C 0.147 3.853 19 C -0.098 4.098 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.009 0.991 31 H 0.251 0.749 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.063 0.937 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.856 3.666 9.587 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.075 4.075 7 C -0.172 4.172 8 C 0.029 3.971 9 N -0.331 5.331 10 C -0.348 4.348 11 H 0.094 0.906 12 C -0.209 4.209 13 N -0.572 5.572 14 Si 0.744 3.256 15 H -0.217 1.217 16 H -0.217 1.217 17 H -0.208 1.208 18 C 0.022 3.978 19 C -0.136 4.136 20 H 0.068 0.932 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.713 3.628 9.399 12.688 hybrid contribution 0.356 -0.698 -0.629 1.005 sum -7.358 2.930 8.769 11.816 Atomic orbital electron populations 1.21750 0.95589 1.01522 1.01039 1.22186 0.94729 0.99183 0.95700 0.91071 1.22471 0.96676 0.99240 0.97135 1.22095 0.96391 1.01050 0.95157 1.21391 0.95290 0.96992 0.93782 1.22999 0.96794 0.97081 1.00293 1.21935 1.02714 0.82426 0.89990 1.44617 1.56909 1.02542 1.29051 1.19101 1.23213 0.87435 1.05029 0.90633 1.24782 1.00933 0.96396 0.98800 1.69827 1.43913 1.14011 1.29491 0.86086 0.78576 0.80545 0.80402 1.21727 1.21701 1.20757 1.21344 0.93469 0.93261 0.89755 1.22316 0.95033 0.99267 0.96937 0.93224 0.92892 0.92802 0.92482 0.91994 0.92013 0.91975 0.92584 0.92450 0.88001 0.97272 0.93872 0.96122 0.96316 0.91847 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.27 37.16 0.34 -1.26 16 2 C -0.10 -1.32 3.50 -88.44 -0.31 -1.63 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.51 6.30 -24.86 -0.16 -1.66 16 5 C -0.11 -1.65 6.13 -26.00 -0.16 -1.81 16 6 C -0.07 -1.35 0.74 -153.79 -0.11 -1.46 16 7 C -0.13 -2.66 5.72 -25.05 -0.14 -2.80 16 8 C 0.15 3.90 5.72 -2.37 -0.01 3.89 16 9 N -0.61 -16.20 3.41 -170.33 -0.58 -16.78 16 10 C -0.22 -6.34 10.28 -15.06 -0.15 -6.50 16 11 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 12 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 13 N -0.92 -27.69 10.09 55.49 0.56 -27.13 16 14 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.15 3.26 6.42 -3.49 -0.02 3.23 16 19 C -0.10 -1.61 5.24 -25.48 -0.13 -1.75 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.76 8.04 -51.93 -0.42 0.34 16 25 H 0.06 0.90 7.57 -51.93 -0.39 0.51 16 26 H 0.06 0.93 7.35 -51.93 -0.38 0.55 16 27 H 0.06 1.01 7.97 -51.93 -0.41 0.59 16 28 H 0.06 1.14 7.88 -51.93 -0.41 0.73 16 29 H 0.10 2.89 5.89 -51.93 -0.31 2.59 16 30 H 0.01 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.02 0.46 7.44 -51.93 -0.39 0.07 16 33 H 0.02 0.42 7.43 -51.93 -0.39 0.03 16 34 H 0.06 1.06 7.39 -51.93 -0.38 0.67 16 35 H 0.07 1.15 7.66 -51.93 -0.40 0.75 16 LS Contribution 268.71 15.07 4.05 4.05 Total: -1.00 -30.14 268.71 -7.90 -38.04 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.95 Total: -3.53 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.96 Total: -12.25 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.02 Total: -43.91 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.14 -7.90 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307533039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.466 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds