Wall clock time and date at job start Thu Apr 9 2020 11:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.65080 * 2 1 4 4 C 1.54989 * 110.72908 * 123.16705 * 2 1 3 5 5 C 1.54559 * 104.22576 * 155.89003 * 4 2 1 6 6 C 1.52822 * 106.16413 * 336.52988 * 5 4 2 7 7 C 1.54100 * 111.11307 * 121.93086 * 6 5 4 8 8 C 1.55100 * 101.47224 * 154.69304 * 7 6 5 9 9 N 1.47520 * 104.95261 * 324.05658 * 8 7 6 10 10 C 1.36937 * 125.66776 * 203.92003 * 9 8 7 11 11 H 1.08000 * 120.00428 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.00097 * 0.02562 * 10 9 8 13 13 N 1.31625 * 119.99672 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00328 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47072 * 90.00020 * 14 12 10 16 16 H 1.48490 * 109.47279 * 210.00163 * 14 12 10 17 17 H 1.48504 * 109.46684 * 330.00343 * 14 12 10 18 18 C 1.47292 * 108.66330 * 23.93268 * 9 8 7 19 19 C 1.53225 * 107.73021 * 0.30413 * 6 5 4 20 20 H 1.08999 * 109.46962 * 300.70267 * 1 2 3 21 21 H 1.09001 * 109.47231 * 60.70101 * 1 2 3 22 22 H 1.08997 * 109.47399 * 180.70299 * 1 2 3 23 23 H 1.09001 * 110.47676 * 274.57759 * 4 2 1 24 24 H 1.09001 * 110.48068 * 37.07500 * 4 2 1 25 25 H 1.09007 * 110.11176 * 95.70223 * 5 4 2 26 26 H 1.08997 * 110.11727 * 217.35231 * 5 4 2 27 27 H 1.09002 * 111.02436 * 272.74401 * 7 6 5 28 28 H 1.08997 * 111.02496 * 36.64749 * 7 6 5 29 29 H 1.08999 * 110.34523 * 205.18129 * 8 7 6 30 30 H 1.09007 * 110.34399 * 82.92358 * 8 7 6 31 31 H 0.96995 * 119.99413 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.96111 * 238.82552 * 18 9 8 33 33 H 1.08997 * 109.95869 * 117.59470 * 18 9 8 34 34 H 1.08997 * 110.53855 * 264.31553 * 19 6 5 35 35 H 1.08998 * 110.54141 * 141.52410 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0786 -0.7930 1.2134 5 6 3.4920 -1.2349 0.7708 6 6 3.4782 -1.2363 -0.7574 7 6 4.5619 -0.2980 -1.3231 8 6 4.8167 -0.9267 -2.7179 9 7 4.6842 -2.3811 -2.5098 10 6 5.2504 -3.3541 -3.2895 11 1 5.0924 -4.3959 -3.0526 12 6 6.0276 -3.0014 -4.3843 13 7 6.2206 -1.7318 -4.6726 14 14 6.7995 -4.3287 -5.4482 15 1 5.8641 -4.6917 -6.5430 16 1 8.0685 -3.8217 -6.0292 17 1 7.0793 -5.5279 -4.6182 18 6 3.8414 -2.6128 -1.3243 19 6 2.0830 -0.7953 -1.2119 20 1 -0.3633 0.5247 0.8836 21 1 -0.3634 0.5029 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 2.1373 -0.1519 2.0929 24 1 1.4516 -1.6612 1.4166 25 1 4.2375 -0.5295 1.1383 26 1 3.7061 -2.2361 1.1446 27 1 4.1870 0.7213 -1.4161 28 1 5.4630 -0.3271 -0.7105 29 1 5.8208 -0.6835 -3.0655 30 1 4.0722 -0.5768 -3.4331 31 1 6.7634 -1.4854 -5.4379 32 1 4.3943 -3.1872 -0.5811 33 1 2.9359 -3.1480 -1.6104 34 1 1.4561 -1.6628 -1.4182 35 1 2.1518 -0.1542 -2.0907 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307533039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:22 Heat of formation + Delta-G solvation = -13.484719 kcal Electronic energy + Delta-G solvation = -14431.828687 eV Core-core repulsion = 12235.668409 eV Total energy + Delta-G solvation = -2196.160277 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75056 -37.20244 -34.29376 -31.88813 -30.74573 -29.26879 -27.43257 -26.14943 -23.46914 -22.29394 -20.63311 -19.78721 -18.70165 -17.00592 -16.52383 -15.94631 -15.32558 -14.88419 -14.74338 -14.30472 -13.90657 -13.67004 -13.22234 -13.04401 -12.83299 -12.74589 -12.48846 -12.40041 -12.01198 -11.83411 -11.71581 -11.44919 -11.31343 -11.27259 -11.13154 -10.91509 -10.73580 -8.87867 -7.77825 -5.22273 1.44255 1.46914 1.55792 2.48886 3.30368 3.64091 3.68363 3.74086 3.87910 4.25478 4.37088 4.44066 4.54741 4.62988 4.72860 4.78560 4.79834 4.91022 4.93798 5.04490 5.08229 5.14170 5.21623 5.23102 5.34032 5.42332 5.44086 5.48795 5.56963 5.65487 5.68623 5.83542 6.30249 7.10410 7.78275 8.44056 9.24145 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.062021 B = 0.007732 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.350056 B = 3620.654960 C = 3650.660447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.107 4.107 6 C -0.068 4.068 7 C -0.119 4.119 8 C 0.158 3.842 9 N -0.628 5.628 10 C -0.242 4.242 11 H 0.078 0.922 12 C -0.070 4.070 13 N -0.950 5.950 14 Si 0.983 3.017 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.269 1.269 18 C 0.142 3.858 19 C -0.099 4.099 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.067 0.933 30 H -0.018 1.018 31 H 0.247 0.753 32 H 0.022 0.978 33 H 0.016 0.984 34 H 0.057 0.943 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 3.718 11.292 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 H 0.095 0.905 4 C -0.147 4.147 5 C -0.144 4.144 6 C -0.068 4.068 7 C -0.157 4.157 8 C 0.033 3.967 9 N -0.354 5.354 10 C -0.371 4.371 11 H 0.096 0.904 12 C -0.262 4.262 13 N -0.600 5.600 14 Si 0.811 3.189 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.194 1.194 18 C 0.017 3.983 19 C -0.137 4.137 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.000 1.000 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.639 3.674 11.133 14.563 hybrid contribution 0.632 -0.733 -1.189 1.533 sum -8.007 2.941 9.944 13.101 Atomic orbital electron populations 1.21728 0.93949 1.01903 1.02050 1.22156 0.96073 0.98883 0.93931 0.90460 1.22449 0.94792 0.99863 0.97578 1.22066 0.98560 1.01625 0.92180 1.21400 0.95489 0.93792 0.96126 1.22858 0.97783 0.98269 0.96785 1.21712 0.99805 0.82579 0.92652 1.44950 1.57575 1.02762 1.30103 1.19496 1.23559 0.88241 1.05786 0.90382 1.25681 1.01635 0.98694 1.00207 1.70090 1.44393 1.15855 1.29696 0.85014 0.77300 0.78165 0.78470 1.21352 1.21718 1.19376 1.21570 0.92503 0.95880 0.88337 1.22294 0.94139 0.99294 0.97970 0.91159 0.92963 0.92802 0.90005 0.91247 0.91083 0.91896 0.90318 0.92202 0.91472 0.99987 0.94357 0.95999 0.96645 0.92460 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.27 71.98 0.67 -2.03 16 2 C -0.09 -2.16 3.50 -9.38 -0.03 -2.19 16 3 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 4 C -0.11 -2.37 6.30 31.81 0.20 -2.17 16 5 C -0.11 -2.92 6.13 31.07 0.19 -2.73 16 6 C -0.07 -2.39 0.74 -51.71 -0.04 -2.42 16 7 C -0.12 -4.68 5.72 31.69 0.18 -4.50 16 8 C 0.16 8.24 5.72 86.90 0.50 8.74 16 9 N -0.63 -34.45 3.41 -692.79 -2.36 -36.81 16 10 C -0.24 -14.28 10.28 84.03 0.86 -13.42 16 11 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 12 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 13 N -0.95 -58.82 10.09 21.65 0.22 -58.60 16 14 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 15 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 16 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 18 C 0.14 6.28 6.42 86.31 0.55 6.84 16 19 C -0.10 -3.16 5.24 31.40 0.16 -2.99 16 20 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 25 H 0.07 1.84 7.57 -2.38 -0.02 1.82 16 26 H 0.06 1.73 7.35 -2.39 -0.02 1.71 16 27 H 0.08 2.73 7.97 -2.39 -0.02 2.71 16 28 H 0.06 2.32 7.88 -2.39 -0.02 2.30 16 29 H 0.07 3.99 5.89 -2.39 -0.01 3.97 16 30 H -0.02 -1.00 8.07 -2.38 -0.02 -1.02 16 31 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.02 0.96 7.44 -2.39 -0.02 0.94 16 33 H 0.02 0.69 7.43 -2.39 -0.02 0.68 16 34 H 0.06 1.87 7.39 -2.39 -0.02 1.85 16 35 H 0.05 1.66 7.66 -2.39 -0.02 1.64 16 Total: -1.00 -66.23 268.71 4.63 -61.60 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 1.03 Total: 5.19 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 3.71 Total: -20.54 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -2.14 Total: -95.41 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -66.23 4.63 -61.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307533039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.112 kcal (2) G-P(sol) polarization free energy of solvation -66.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds