Wall clock time and date at job start Thu Apr 9 2020 11:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46835 * 270.00097 * 3 2 1 5 5 H 1.48508 * 109.46908 * 29.99786 * 3 2 1 6 6 H 1.48495 * 109.47270 * 149.99544 * 3 2 1 7 7 C 1.40122 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.46141 * 120.00117 * 0.02562 * 7 2 1 10 10 O 1.21747 * 120.00159 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99867 * 179.97438 * 9 7 2 12 12 C 1.39618 * 120.00006 * 185.26410 * 11 9 7 13 13 C 1.39483 * 120.47030 * 32.78294 * 12 11 9 14 14 C 1.38343 * 118.38192 * 179.97438 * 13 12 11 15 15 C 1.38650 * 119.22926 * 359.97438 * 14 13 12 16 16 F 1.35105 * 119.56085 * 180.02562 * 15 14 13 17 17 N 1.32039 * 120.88396 * 0.02562 * 15 14 13 18 18 C 1.31859 * 121.77383 * 0.02562 * 17 15 14 19 19 H 0.96998 * 120.00163 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99794 * 5.26999 * 11 9 7 21 21 H 1.08008 * 120.81218 * 359.95437 * 13 12 11 22 22 H 1.07998 * 120.38682 * 179.72853 * 14 13 12 23 23 H 1.08000 * 119.65867 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0001 9 6 1.2763 -2.4791 0.0005 10 8 0.0589 -2.4792 0.0005 11 7 1.9503 -3.6463 0.0005 12 6 1.2566 -4.8529 -0.1104 13 6 0.0835 -4.9279 -0.8611 14 6 -0.5686 -6.1453 -0.9423 15 6 -0.0389 -7.2426 -0.2806 16 9 -0.6700 -8.4348 -0.3558 17 7 1.0741 -7.1379 0.4221 18 6 1.7252 -5.9960 0.5254 19 1 -0.4850 0.8400 -0.0004 20 1 2.9172 -3.6480 0.0777 21 1 -0.3066 -4.0567 -1.3666 22 1 -1.4818 -6.2390 -1.5112 23 1 2.6328 -5.9492 1.1089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307560396.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:25 Heat of formation + Delta-G solvation = -47.537044 kcal Electronic energy + Delta-G solvation = -12965.161774 eV Core-core repulsion = 10306.972472 eV Total energy + Delta-G solvation = -2658.189302 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.055 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.52333 -39.83659 -37.47578 -33.82787 -32.61534 -31.85656 -29.11031 -26.39743 -23.54072 -22.81668 -20.14062 -18.06523 -17.55379 -16.42275 -16.34160 -15.63755 -15.45615 -14.24141 -14.09215 -13.44128 -13.40428 -12.88883 -12.56371 -12.25826 -12.23069 -11.43120 -11.20471 -10.79535 -10.45122 -9.96312 -9.41881 -9.23625 -9.02198 -7.96042 -7.35448 -6.49000 -4.97096 1.38563 1.65082 2.99650 3.07300 3.10605 3.84661 3.97480 4.04908 4.34608 4.39251 5.00391 5.28469 5.36416 5.49915 5.80131 5.93741 6.46309 6.63005 6.94211 7.15979 7.50560 7.71462 7.95146 8.08199 8.70925 8.99706 10.19373 10.40959 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.089257 B = 0.007022 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.624829 B = 3986.457215 C = 4229.936069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.539 3.461 10 O -0.560 6.560 11 N -0.690 5.690 12 C 0.141 3.859 13 C -0.067 4.067 14 C -0.166 4.166 15 C 0.246 3.754 16 F -0.127 7.127 17 N -0.495 5.495 18 C 0.072 3.928 19 H 0.274 0.726 20 H 0.398 0.602 21 H 0.159 0.841 22 H 0.141 0.859 23 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.229 -5.275 -1.564 6.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.347 3.653 10 O -0.442 6.442 11 N -0.334 5.334 12 C 0.038 3.962 13 C -0.095 4.095 14 C -0.188 4.188 15 C 0.090 3.910 16 F -0.106 7.106 17 N -0.209 5.209 18 C -0.089 4.089 19 H 0.085 0.915 20 H 0.232 0.768 21 H 0.176 0.824 22 H 0.159 0.841 23 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.483 -5.803 -1.153 6.417 hybrid contribution 0.448 1.253 -0.304 1.365 sum 2.931 -4.550 -1.457 5.605 Atomic orbital electron populations 1.69972 1.07226 1.28107 1.33104 1.25775 0.94759 1.00695 0.92446 0.86229 0.80112 0.80616 0.79084 1.19483 1.20211 1.18671 1.20846 0.93953 0.88759 1.53424 0.90716 1.18467 0.87524 0.82014 0.77330 1.90646 1.13671 1.85860 1.54049 1.44193 1.09895 1.03749 1.75521 1.19016 0.94679 0.88362 0.94118 1.21721 0.94570 0.97378 0.95869 1.21694 1.02346 0.92053 1.02707 1.17949 0.91594 0.81494 0.99946 1.91540 1.79877 1.44413 1.94811 1.66750 1.07567 1.28598 1.17945 1.22204 1.00810 0.86555 0.99340 0.91520 0.76768 0.82360 0.84129 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.95 11.82 55.55 0.66 -20.30 14 2 C 0.09 2.18 5.50 -17.35 -0.10 2.08 14 3 Si 0.92 18.54 29.56 -169.99 -5.02 13.51 14 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 14 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.53 -13.69 9.53 -35.71 -0.34 -14.03 14 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 14 9 C 0.54 13.93 7.50 -13.09 -0.10 13.84 14 10 O -0.56 -16.42 12.70 5.15 0.07 -16.35 14 11 N -0.69 -14.12 5.34 -11.10 -0.06 -14.18 14 12 C 0.14 2.73 6.31 -83.59 -0.53 2.21 14 13 C -0.07 -1.32 8.76 -39.08 -0.34 -1.66 14 14 C -0.17 -2.86 10.08 -39.39 -0.40 -3.26 14 15 C 0.25 4.40 8.41 -17.31 -0.15 4.25 14 16 F -0.13 -2.17 17.29 2.25 0.04 -2.13 14 17 N -0.49 -9.08 10.36 -13.38 -0.14 -9.22 14 18 C 0.07 1.23 11.12 -17.28 -0.19 1.04 14 19 H 0.27 6.87 8.29 -40.82 -0.34 6.53 14 20 H 0.40 6.73 8.80 -40.82 -0.36 6.38 14 21 H 0.16 3.45 6.48 -52.48 -0.34 3.11 14 22 H 0.14 2.02 8.06 -52.49 -0.42 1.59 14 23 H 0.16 2.24 8.06 -52.49 -0.42 1.81 14 LS Contribution 223.13 15.07 3.36 3.36 Total: -1.00 -30.59 223.13 -4.33 -34.92 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.09 Total: 5.90 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -2.14 Total: 4.47 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.46 Total: -43.70 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.07 Total: -16.35 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.59 -4.33 -34.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307560396.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.615 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds