Wall clock time and date at job start Thu Apr 9 2020 11:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86804 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46835 * 270.00097 * 3 2 1 5 5 H 1.48508 * 109.46908 * 29.99786 * 3 2 1 6 6 H 1.48495 * 109.47270 * 149.99544 * 3 2 1 7 7 C 1.40122 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99584 * 179.97438 * 7 2 1 9 9 C 1.46141 * 120.00117 * 0.02562 * 7 2 1 10 10 O 1.21747 * 120.00159 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99867 * 179.97438 * 9 7 2 12 12 C 1.39618 * 120.00006 * 185.26410 * 11 9 7 13 13 C 1.39483 * 120.47030 * 32.78294 * 12 11 9 14 14 C 1.38343 * 118.38192 * 179.97438 * 13 12 11 15 15 C 1.38650 * 119.22926 * 359.97438 * 14 13 12 16 16 F 1.35105 * 119.56085 * 180.02562 * 15 14 13 17 17 N 1.32039 * 120.88396 * 0.02562 * 15 14 13 18 18 C 1.31859 * 121.77383 * 0.02562 * 17 15 14 19 19 H 0.96998 * 120.00163 * 0.02562 * 1 2 3 20 20 H 0.97003 * 119.99794 * 5.26999 * 11 9 7 21 21 H 1.08008 * 120.81218 * 359.95437 * 13 12 11 22 22 H 1.07998 * 120.38682 * 179.72853 * 14 13 12 23 23 H 1.08000 * 119.65867 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4878 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5379 1.4403 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0001 9 6 1.2763 -2.4791 0.0005 10 8 0.0589 -2.4792 0.0005 11 7 1.9503 -3.6463 0.0005 12 6 1.2566 -4.8529 -0.1104 13 6 0.0835 -4.9279 -0.8611 14 6 -0.5686 -6.1453 -0.9423 15 6 -0.0389 -7.2426 -0.2806 16 9 -0.6700 -8.4348 -0.3558 17 7 1.0741 -7.1379 0.4221 18 6 1.7252 -5.9960 0.5254 19 1 -0.4850 0.8400 -0.0004 20 1 2.9172 -3.6480 0.0777 21 1 -0.3066 -4.0567 -1.3666 22 1 -1.4818 -6.2390 -1.5112 23 1 2.6328 -5.9492 1.1089 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307560396.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:25 Heat of formation + Delta-G solvation = -69.503592 kcal Electronic energy + Delta-G solvation = -12966.114315 eV Core-core repulsion = 10306.972472 eV Total energy + Delta-G solvation = -2659.141843 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.055 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.93203 -41.37183 -39.27203 -35.59581 -34.56993 -33.33190 -30.72737 -28.26541 -25.01933 -24.39137 -21.92629 -19.79050 -19.00763 -18.03497 -17.98304 -17.34776 -16.99083 -15.91484 -15.52900 -15.11941 -14.91181 -14.63065 -14.09239 -13.90533 -13.75897 -13.18104 -12.80420 -12.73072 -12.04141 -11.59906 -10.97868 -10.88877 -10.69206 -9.92406 -8.97064 -8.39311 -6.96483 -0.05826 0.14865 1.42201 1.43076 1.58981 2.19352 2.29819 2.55532 2.68202 2.82927 3.52248 3.61409 3.88836 3.94789 4.29329 4.61700 4.98483 5.10157 5.25924 5.47107 5.73319 6.07511 6.12026 6.61232 6.76818 7.24753 8.28332 8.53559 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.089257 B = 0.007022 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 313.624829 B = 3986.457215 C = 4229.936069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.030 3.970 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.559 4.559 8 H 0.098 0.902 9 C 0.528 3.472 10 O -0.605 6.605 11 N -0.679 5.679 12 C 0.118 3.882 13 C -0.084 4.084 14 C -0.156 4.156 15 C 0.246 3.754 16 F -0.120 7.120 17 N -0.505 5.505 18 C 0.093 3.907 19 H 0.278 0.722 20 H 0.415 0.585 21 H 0.131 0.869 22 H 0.168 0.832 23 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 -5.437 -1.316 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.170 1.170 7 C -0.594 4.594 8 H 0.116 0.884 9 C 0.336 3.664 10 O -0.491 6.491 11 N -0.324 5.324 12 C 0.017 3.983 13 C -0.112 4.112 14 C -0.177 4.177 15 C 0.092 3.908 16 F -0.100 7.100 17 N -0.219 5.219 18 C -0.068 4.068 19 H 0.088 0.912 20 H 0.253 0.747 21 H 0.149 0.851 22 H 0.185 0.815 23 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.048 -6.031 -0.910 7.320 hybrid contribution -0.055 1.149 -0.392 1.215 sum 3.994 -4.881 -1.302 6.440 Atomic orbital electron populations 1.70127 1.09528 1.29504 1.34750 1.26989 0.95542 1.05012 0.91137 0.84964 0.78828 0.74830 0.79442 1.18660 1.20040 1.16985 1.21400 0.95247 0.89235 1.53513 0.88432 1.18762 0.87196 0.83648 0.76836 1.90611 1.15584 1.86972 1.55940 1.43672 1.10614 1.02962 1.75189 1.19199 0.95093 0.88644 0.95343 1.21600 0.95470 0.97477 0.96693 1.21818 1.02835 0.90783 1.02293 1.18079 0.91493 0.81751 0.99522 1.91559 1.79727 1.43966 1.94706 1.66862 1.07901 1.28840 1.18294 1.22633 1.01130 0.85071 0.97968 0.91158 0.74741 0.85111 0.81456 0.78634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.98 11.82 21.85 0.26 -45.72 14 2 C 0.03 1.54 5.50 85.33 0.47 2.01 14 3 Si 1.00 37.46 29.56 68.60 2.03 39.49 14 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 5 H -0.28 -10.13 7.11 99.48 0.71 -9.42 14 6 H -0.25 -8.52 7.11 99.48 0.71 -7.81 14 7 C -0.56 -28.54 9.53 24.78 0.24 -28.30 14 8 H 0.10 4.35 7.85 -2.91 -0.02 4.33 14 9 C 0.53 27.70 7.50 86.29 0.65 28.34 14 10 O -0.61 -36.72 12.70 -4.50 -0.06 -36.77 14 11 N -0.68 -27.50 5.34 -307.21 -1.64 -29.14 14 12 C 0.12 4.52 6.31 38.37 0.24 4.76 14 13 C -0.08 -3.33 8.76 22.60 0.20 -3.13 14 14 C -0.16 -5.20 10.08 22.39 0.23 -4.97 14 15 C 0.25 8.35 8.41 84.76 0.71 9.06 14 16 F -0.12 -3.84 17.29 44.97 0.78 -3.07 14 17 N -0.50 -17.37 10.36 -196.23 -2.03 -19.41 14 18 C 0.09 2.98 11.12 84.86 0.94 3.92 14 19 H 0.28 14.32 8.29 -92.71 -0.77 13.56 14 20 H 0.42 13.47 8.80 -92.71 -0.82 12.66 14 21 H 0.13 5.98 6.48 -2.91 -0.02 5.96 14 22 H 0.17 4.54 8.06 -2.91 -0.02 4.52 14 23 H 0.20 4.77 8.06 -2.91 -0.02 4.75 14 Total: -1.00 -66.55 223.13 3.46 -63.10 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.45 Total: 19.84 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 3.68 Total: 11.69 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -3.41 Total: -94.27 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.06 Total: -36.77 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -66.55 3.46 -63.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307560396.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.408 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds