Wall clock time and date at job start Thu Apr 9 2020 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31654 * 1 3 3 Si 1.86798 * 119.99959 * 2 1 4 4 H 1.48506 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 300.00119 * 3 2 1 6 6 H 1.48506 * 109.47035 * 60.00534 * 3 2 1 7 7 C 1.38651 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99588 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99946 * 0.27761 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72319 * 9 7 2 11 11 N 1.31283 * 125.80499 * 359.68469 * 10 9 7 12 12 C 1.34461 * 109.36131 * 179.89375 * 11 10 9 13 13 C 1.34504 * 108.15435 * 0.38429 * 12 11 10 14 14 N 1.36183 * 125.81258 * 179.97438 * 10 9 7 15 15 H 0.97003 * 126.50958 * 359.93536 * 14 10 9 16 16 C 1.51202 * 110.52609 * 179.74564 * 13 12 11 17 17 C 1.54457 * 104.94691 * 343.17906 * 16 13 12 18 18 C 1.51430 * 141.60451 * 180.02562 * 12 11 10 19 19 H 0.97005 * 119.99739 * 359.97438 * 1 2 3 20 20 H 1.09004 * 110.34618 * 102.02876 * 16 13 12 21 21 H 1.08995 * 110.34767 * 224.29264 * 16 13 12 22 22 H 1.09001 * 110.93402 * 267.40435 * 17 16 13 23 23 H 1.08999 * 110.99006 * 143.72380 * 17 16 13 24 24 H 1.08996 * 110.33326 * 316.09602 * 18 12 11 25 25 H 1.09003 * 110.33519 * 78.33928 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 3.7106 1.3463 0.0006 5 1 1.8918 2.3964 -1.2124 6 1 1.8918 2.3964 1.2126 7 6 2.0097 -1.2008 -0.0005 8 1 3.0897 -1.2008 -0.0010 9 16 1.1286 -2.7266 -0.0086 10 6 2.4784 -3.8593 -0.0146 11 7 3.7511 -3.5374 -0.0187 12 6 4.4943 -4.6580 -0.0202 13 6 3.6608 -5.7136 -0.0254 14 7 2.3789 -5.2175 -0.0213 15 1 1.5591 -5.7361 -0.0227 16 6 4.4437 -7.0072 -0.0336 17 6 5.8716 -6.6059 -0.4645 18 6 5.9341 -5.1272 -0.0239 19 1 -0.4850 0.8401 0.0004 20 1 4.4587 -7.4474 0.9635 21 1 4.0134 -7.7061 -0.7508 22 1 5.9923 -6.6956 -1.5441 23 1 6.6194 -7.2009 0.0598 24 1 6.5204 -4.5447 -0.7344 25 1 6.3609 -5.0477 0.9760 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307612987.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:26 Heat of formation + Delta-G solvation = 29.289919 kcal Electronic energy + Delta-G solvation = -11239.762934 eV Core-core repulsion = 9151.118275 eV Total energy + Delta-G solvation = -2088.644659 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.85256 -37.12696 -34.71781 -33.34874 -28.73088 -28.48328 -27.60313 -23.26792 -21.93236 -20.71753 -19.78183 -18.33152 -16.94229 -16.80324 -16.54003 -15.19015 -14.91769 -14.51911 -13.68362 -13.65453 -13.33575 -13.05357 -12.97839 -12.63974 -12.00639 -11.98296 -11.82773 -11.32729 -10.97458 -10.83027 -10.57867 -9.81759 -8.48677 -8.33301 -6.23158 0.92530 1.04732 1.36762 1.38302 1.54699 2.11160 2.13745 2.29380 2.91227 3.15572 3.52190 3.78954 4.21927 4.24867 4.54467 4.78782 4.86619 4.89936 5.06036 5.17548 5.35526 5.42244 5.49264 5.88881 6.26840 6.48520 6.98925 7.20844 8.61845 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.056114 B = 0.008362 C = 0.007340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.860564 B = 3347.729628 C = 3813.911309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.998 3.002 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.084 0.916 9 S 0.071 5.929 10 C 0.184 3.816 11 N -0.524 5.524 12 C -0.063 4.063 13 C -0.070 4.070 14 N -0.541 5.541 15 H 0.427 0.573 16 C -0.020 4.020 17 C -0.098 4.098 18 C -0.035 4.035 19 H 0.278 0.722 20 H 0.097 0.903 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 -13.157 -0.224 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.303 5.697 10 C -0.186 4.186 11 N -0.248 5.248 12 C -0.194 4.194 13 C -0.189 4.189 14 N -0.149 5.149 15 H 0.267 0.733 16 C -0.058 4.058 17 C -0.136 4.136 18 C -0.073 4.073 19 H 0.087 0.913 20 H 0.116 0.884 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.137 0.863 24 H 0.086 0.914 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.190 -12.395 -0.227 14.331 hybrid contribution 0.480 0.543 0.029 0.725 sum 7.670 -11.852 -0.198 14.119 Atomic orbital electron populations 1.70052 1.07224 1.29265 1.48057 1.25975 0.96116 1.02760 0.93168 0.84916 0.78114 0.76289 0.78724 1.19685 1.19004 1.19003 1.23259 0.96438 0.90796 1.58797 0.89810 1.83017 1.00018 0.96220 1.90490 1.26171 0.98476 0.85818 1.08174 1.70112 1.00868 1.30959 1.22873 1.22492 0.99214 0.88913 1.08761 1.22683 0.83691 1.01205 1.11361 1.42535 1.08137 1.05337 1.58868 0.73324 1.20665 0.92589 0.88927 1.03644 1.22413 0.95609 0.92998 1.02568 1.20569 0.87380 0.96971 1.02392 0.91257 0.88432 0.89009 0.89940 0.86255 0.91367 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.47 13.22 21.62 0.29 -53.19 15 2 C 0.03 1.44 5.49 84.82 0.47 1.91 15 3 Si 1.00 45.55 29.55 68.60 2.03 47.57 15 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 15 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.54 -32.94 9.36 67.92 0.64 -32.31 15 8 H 0.08 5.29 6.89 -2.91 -0.02 5.27 15 9 S 0.07 3.84 21.89 -56.49 -1.24 2.60 15 10 C 0.18 9.07 8.25 179.67 1.48 10.56 15 11 N -0.52 -27.16 10.02 -183.59 -1.84 -29.00 15 12 C -0.06 -2.55 7.96 41.53 0.33 -2.22 15 13 C -0.07 -2.39 8.09 40.98 0.33 -2.06 15 14 N -0.54 -20.74 6.24 -181.84 -1.13 -21.88 15 15 H 0.43 13.14 8.96 -92.71 -0.83 12.31 15 16 C -0.02 -0.40 6.79 30.50 0.21 -0.20 15 17 C -0.10 -1.71 7.13 31.57 0.23 -1.49 15 18 C -0.03 -0.96 6.79 30.57 0.21 -0.75 15 19 H 0.28 15.03 8.31 -92.70 -0.77 14.26 15 20 H 0.10 1.62 8.14 -2.38 -0.02 1.60 15 21 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.08 1.33 8.14 -2.39 -0.02 1.31 15 23 H 0.12 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 Total: -1.00 -74.71 235.12 2.37 -72.34 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.38 Total: 8.12 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.89 Total: -26.56 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -2.69 Total: -104.07 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.24 Total: 2.60 kcal Total: -74.71 2.37 -72.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307612987.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.627 kcal (2) G-P(sol) polarization free energy of solvation -74.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds