Wall clock time and date at job start Thu Apr 9 2020 11:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47202 * 2 1 4 4 H 1.09001 * 109.47034 * 303.34765 * 3 2 1 5 5 C 1.50706 * 109.47091 * 183.35077 * 3 2 1 6 6 H 1.08003 * 119.99640 * 244.91973 * 5 3 2 7 7 C 1.37875 * 120.00115 * 65.19086 * 5 3 2 8 8 N 1.31512 * 119.99832 * 359.73092 * 7 5 3 9 9 Si 1.86802 * 120.00004 * 179.72109 * 7 5 3 10 10 H 1.48503 * 109.46944 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46894 * 120.00043 * 9 7 5 12 12 H 1.48494 * 109.47376 * 240.00170 * 9 7 5 13 13 N 1.46896 * 109.47384 * 63.35134 * 3 2 1 14 14 C 1.50644 * 111.00416 * 170.16294 * 13 3 2 15 15 C 1.55852 * 101.02904 * 62.34316 * 14 13 3 16 16 C 1.54838 * 103.51605 * 32.99720 * 15 14 13 17 17 C 1.50652 * 110.99669 * 278.25717 * 13 3 2 18 18 C 1.55848 * 101.02915 * 189.76126 * 17 13 3 19 19 C 1.54835 * 103.51988 * 32.98854 * 18 17 13 20 20 H 1.08999 * 109.47064 * 44.53498 * 1 2 3 21 21 H 1.09002 * 109.46870 * 164.53114 * 1 2 3 22 22 H 1.08996 * 109.47237 * 284.53259 * 1 2 3 23 23 H 1.09000 * 109.47211 * 239.99838 * 2 1 3 24 24 H 1.08999 * 109.47303 * 119.99844 * 2 1 3 25 25 H 0.97002 * 119.99922 * 179.97438 * 8 7 5 26 26 H 1.08998 * 115.87899 * 296.64961 * 14 13 3 27 27 H 1.08995 * 110.61235 * 274.48720 * 15 14 13 28 28 H 1.09004 * 110.74612 * 151.56686 * 15 14 13 29 29 H 1.09001 * 110.61341 * 241.49254 * 16 15 14 30 30 H 1.09005 * 110.61605 * 118.50820 * 16 15 14 31 31 H 1.08997 * 115.88690 * 63.34418 * 17 13 3 32 32 H 1.08993 * 110.61966 * 151.49833 * 18 17 13 33 33 H 1.09007 * 110.61183 * 274.48212 * 18 17 13 34 34 H 1.09006 * 110.61593 * 241.49634 * 19 18 17 35 35 H 1.08995 * 110.61605 * 118.51061 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9734 -0.8585 5 6 3.5447 1.4433 -0.0830 6 1 4.1308 1.8235 0.7406 7 6 4.1731 0.9638 -1.2128 8 7 3.4594 0.5009 -2.2157 9 14 6.0380 0.9720 -1.3188 10 1 6.6025 1.5394 -0.0679 11 1 6.5297 -0.4178 -1.4975 12 1 6.4645 1.8004 -2.4751 13 7 1.6176 2.1113 1.2378 14 6 2.2956 3.4481 1.3877 15 6 1.7516 4.2003 0.1358 16 6 0.3249 3.6252 -0.0404 17 6 0.1975 2.6022 1.1286 18 6 0.0830 3.4724 2.4164 19 6 1.5097 4.0476 2.5926 20 1 -0.3633 0.7325 -0.7207 21 1 -0.3633 -0.9905 -0.2741 22 1 -0.3633 0.2579 0.9947 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.9014 0.1640 -3.0107 26 1 3.3808 3.4227 1.4868 27 1 2.3640 3.9823 -0.7390 28 1 1.7126 5.2744 0.3174 29 1 0.2301 3.1220 -1.0026 30 1 -0.4215 4.4137 0.0566 31 1 -0.5635 1.8326 0.9996 32 1 -0.6397 4.2758 2.2738 33 1 -0.1908 2.8562 3.2729 34 1 1.9431 3.7165 3.5364 35 1 1.4942 5.1361 2.5373 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307722284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:30 Heat of formation + Delta-G solvation = 2.304244 kcal Electronic energy + Delta-G solvation = -15031.297226 eV Core-core repulsion = 12835.821610 eV Total energy + Delta-G solvation = -2195.475617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55102 -36.21029 -33.73240 -31.55708 -30.82751 -29.80029 -27.96390 -25.01607 -22.87001 -21.91881 -20.53191 -20.21381 -18.06851 -17.41286 -16.46090 -16.31748 -15.46433 -14.87510 -14.58485 -13.83941 -13.54530 -13.42290 -13.20017 -13.02971 -12.82969 -12.57563 -12.48864 -12.32091 -12.05758 -12.01637 -11.64040 -11.48300 -11.34763 -10.99131 -10.71093 -10.62208 -10.47571 -9.00816 -8.10386 -6.18813 1.36733 1.39347 1.49987 2.41667 3.19438 3.35246 3.85106 3.97478 4.22845 4.39474 4.46043 4.56683 4.61474 4.63452 4.67580 4.70325 4.77521 4.88619 4.97143 5.08300 5.13338 5.20238 5.24242 5.34698 5.39013 5.49523 5.58481 5.60989 5.67546 5.72954 5.88449 6.24669 6.39801 6.72142 6.99632 7.49442 8.96751 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034742 B = 0.012720 C = 0.010704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.758334 B = 2200.645903 C = 2615.187732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.204 3.796 4 H -0.006 1.006 5 C -0.515 4.515 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.503 5.503 14 C 0.050 3.950 15 C -0.139 4.139 16 C -0.142 4.142 17 C 0.022 3.978 18 C -0.103 4.103 19 C -0.107 4.107 20 H 0.039 0.961 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.049 0.951 24 H 0.028 0.972 25 H 0.259 0.741 26 H 0.086 0.914 27 H 0.031 0.969 28 H 0.078 0.922 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.401 6.198 6.553 11.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.141 4.141 3 C 0.096 3.904 4 H 0.012 0.988 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.226 5.226 14 C -0.058 4.058 15 C -0.177 4.177 16 C -0.180 4.180 17 C -0.087 4.087 18 C -0.141 4.141 19 C -0.145 4.145 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.250 5.669 6.847 10.866 hybrid contribution 1.221 0.152 -1.480 1.925 sum -5.029 5.822 5.367 9.380 Atomic orbital electron populations 1.21940 0.96439 1.00195 1.00794 1.21337 0.94381 0.99055 0.99364 1.19271 0.93457 0.90952 0.86708 0.98823 1.21522 0.92703 1.40142 1.00980 0.93128 1.25629 1.02016 0.95365 0.95574 1.70054 1.36264 1.43116 1.06499 0.85635 0.81307 0.77577 0.77908 1.19309 1.20831 1.20851 1.67567 1.02426 1.17315 1.35298 1.24201 0.97884 0.88942 0.94821 1.23070 0.96086 0.99901 0.98694 1.23150 0.96962 0.99103 0.98831 1.24945 0.93264 0.95430 0.95012 1.22555 0.96671 0.98426 0.96452 1.22580 0.95415 0.99610 0.96936 0.94230 0.93497 0.91572 0.93241 0.95355 0.93240 0.89641 0.94985 0.90314 0.94461 0.89642 0.86327 0.89816 0.91154 0.91691 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.23 71.98 0.59 -4.77 16 2 C -0.10 -5.05 5.48 30.59 0.17 -4.89 16 3 C 0.20 10.30 1.00 44.17 0.04 10.34 16 4 H -0.01 -0.32 5.05 -2.39 -0.01 -0.33 16 5 C -0.51 -28.67 7.70 25.60 0.20 -28.48 16 6 H 0.05 2.84 6.40 -2.91 -0.02 2.82 16 7 C 0.01 0.71 5.31 84.65 0.45 1.16 16 8 N -0.92 -53.93 11.69 21.45 0.25 -53.67 16 9 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.50 -21.42 5.36 -784.02 -4.20 -25.62 16 14 C 0.05 1.95 4.14 46.15 0.19 2.14 16 15 C -0.14 -5.19 5.61 32.21 0.18 -5.01 16 16 C -0.14 -4.94 5.63 32.21 0.18 -4.75 16 17 C 0.02 0.75 3.90 46.15 0.18 0.93 16 18 C -0.10 -2.81 6.43 32.21 0.21 -2.60 16 19 C -0.11 -3.13 6.43 32.21 0.21 -2.92 16 20 H 0.04 1.55 7.60 -2.39 -0.02 1.53 16 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.07 2.33 6.09 -2.39 -0.01 2.31 16 23 H 0.05 2.74 6.42 -2.39 -0.02 2.72 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.09 3.66 6.72 -2.39 -0.02 3.65 16 27 H 0.03 1.44 7.55 -2.39 -0.02 1.42 16 28 H 0.08 2.45 7.83 -2.38 -0.02 2.43 16 29 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 30 H 0.09 2.40 7.82 -2.38 -0.02 2.38 16 31 H 0.12 3.94 4.66 -2.39 -0.01 3.93 16 32 H 0.08 1.85 7.82 -2.39 -0.02 1.83 16 33 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 34 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.08 1.96 7.82 -2.39 -0.02 1.94 16 Total: -1.00 -61.08 257.36 1.73 -59.35 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.06 Total: 12.07 kcal Atomic # 6 Polarization: -41.45 SS G_CDS: 2.60 Total: -38.86 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -3.95 Total: -79.30 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -61.08 1.73 -59.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307722284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.656 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds