Wall clock time and date at job start Thu Apr 9 2020 11:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86797 * 119.99694 * 2 1 4 4 H 1.48509 * 109.46851 * 269.99663 * 3 2 1 5 5 H 1.48497 * 109.47567 * 29.99428 * 3 2 1 6 6 H 1.48496 * 109.47140 * 149.99965 * 3 2 1 7 7 C 1.38813 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 0.02562 * 7 2 1 9 9 O 1.34848 * 119.99769 * 179.97438 * 7 2 1 10 10 C 1.34729 * 117.00244 * 180.02562 * 9 7 2 11 11 O 1.21517 * 119.99750 * 0.02562 * 10 9 7 12 12 C 1.47670 * 120.00365 * 180.02562 * 10 9 7 13 13 C 1.39681 * 120.13901 * 359.97438 * 12 10 9 14 14 C 1.37920 * 119.89175 * 180.02562 * 13 12 10 15 15 C 1.38362 * 120.18796 * 359.97438 * 14 13 12 16 16 C 1.38566 * 120.28003 * 0.02562 * 15 14 13 17 17 F 1.35101 * 119.94736 * 179.97438 * 16 15 14 18 18 C 1.38188 * 120.10629 * 359.97438 * 16 15 14 19 19 H 0.96995 * 119.99889 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.05172 * 359.97438 * 13 12 10 21 21 H 1.08003 * 119.90433 * 180.02562 * 14 13 12 22 22 H 1.08000 * 119.85703 * 179.97438 * 15 14 13 23 23 H 1.07990 * 120.09339 * 180.27878 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0083 -1.2022 0.0005 8 1 1.4683 -2.1374 0.0005 9 8 3.3568 -1.2021 0.0000 10 6 3.9685 -2.4025 0.0000 11 8 3.3067 -3.4217 0.0001 12 6 5.4432 -2.4798 0.0001 13 6 6.2068 -1.3101 -0.0005 14 6 7.5838 -1.3882 -0.0010 15 6 8.2107 -2.6217 -0.0004 16 6 7.4605 -3.7867 0.0001 17 9 8.0796 -4.9875 0.0001 18 6 6.0801 -3.7223 0.0006 19 1 -0.4850 0.8400 -0.0004 20 1 5.7197 -0.3463 -0.0014 21 1 8.1744 -0.4840 -0.0010 22 1 9.2893 -2.6766 -0.0013 23 1 5.4957 -4.6304 0.0056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307755755.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:33 Heat of formation + Delta-G solvation = -99.031666 kcal Electronic energy + Delta-G solvation = -12926.696319 eV Core-core repulsion = 10233.981292 eV Total energy + Delta-G solvation = -2692.715028 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.83857 -39.65040 -38.15335 -35.42605 -32.46586 -31.16493 -30.44206 -25.99231 -23.62784 -22.47102 -20.32847 -18.15903 -17.84803 -16.33803 -16.05433 -15.71703 -15.56908 -14.93668 -14.77332 -14.10617 -13.71759 -13.07308 -12.57381 -12.28602 -12.25790 -11.79309 -11.34557 -11.18144 -10.61157 -10.47995 -9.81985 -9.35438 -9.02111 -8.79620 -8.67664 -6.50196 -4.21198 0.86998 1.25796 3.04478 3.16353 3.22202 3.28370 3.82325 4.03243 4.14063 4.40069 4.87470 4.92125 5.02781 5.27201 5.38505 5.56930 5.93306 6.06991 6.25167 6.41376 6.56232 6.89535 7.60003 7.91360 8.50667 8.86691 9.54310 10.57288 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.053109 B = 0.008506 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.089006 B = 3291.036515 C = 3808.283753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.374 4.374 8 H 0.113 0.887 9 O -0.238 6.238 10 C 0.440 3.560 11 O -0.533 6.533 12 C -0.057 4.057 13 C -0.089 4.089 14 C -0.102 4.102 15 C -0.142 4.142 16 C 0.086 3.914 17 F -0.141 7.141 18 C -0.105 4.105 19 H 0.282 0.718 20 H 0.143 0.857 21 H 0.136 0.864 22 H 0.135 0.865 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.976 -0.027 0.015 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.449 4.449 8 H 0.130 0.870 9 O -0.146 6.146 10 C 0.288 3.712 11 O -0.430 6.430 12 C -0.059 4.059 13 C -0.107 4.107 14 C -0.120 4.120 15 C -0.161 4.161 16 C 0.067 3.933 17 F -0.119 7.119 18 C -0.124 4.124 19 H 0.093 0.907 20 H 0.161 0.839 21 H 0.154 0.846 22 H 0.153 0.847 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.600 -0.186 0.019 14.601 hybrid contribution 0.247 0.475 -0.013 0.536 sum 14.848 0.289 0.006 14.851 Atomic orbital electron populations 1.69590 1.05805 1.28780 1.46008 1.24604 0.95065 0.98870 0.95411 0.86201 0.80378 0.81229 0.79097 1.19621 1.20529 1.18206 1.20751 0.75994 0.97203 1.50959 0.86986 1.83509 1.24068 1.30904 1.76154 1.20329 0.87477 0.82850 0.80572 1.90689 1.66286 1.35948 1.50052 1.19175 0.91450 0.93186 1.02089 1.21638 0.93640 0.98921 0.96550 1.20969 0.94339 0.97147 0.99566 1.21246 1.00542 0.91485 1.02873 1.17449 0.90415 0.80703 1.04715 1.91492 1.82835 1.43429 1.94176 1.21186 0.92453 0.99074 0.99725 0.90721 0.83922 0.84574 0.84708 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 13.96 55.49 0.77 -24.14 14 2 C 0.07 1.83 5.50 -17.51 -0.10 1.73 14 3 Si 0.91 20.54 28.62 -169.99 -4.86 15.67 14 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 14 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 14 7 C -0.37 -10.92 10.11 30.95 0.31 -10.61 14 8 H 0.11 3.61 7.09 -52.49 -0.37 3.24 14 9 O -0.24 -6.19 7.82 -21.62 -0.17 -6.36 14 10 C 0.44 10.62 7.84 34.58 0.27 10.89 14 11 O -0.53 -14.40 15.59 -19.28 -0.30 -14.70 14 12 C -0.06 -1.08 5.87 -104.99 -0.62 -1.69 14 13 C -0.09 -1.39 9.62 -39.16 -0.38 -1.76 14 14 C -0.10 -1.24 10.03 -39.65 -0.40 -1.63 14 15 C -0.14 -1.71 10.02 -39.41 -0.39 -2.11 14 16 C 0.09 1.24 7.29 -39.48 -0.29 0.95 14 17 F -0.14 -2.00 17.26 2.25 0.04 -1.96 14 18 C -0.11 -1.77 9.58 -39.08 -0.37 -2.14 14 19 H 0.28 7.39 8.31 -40.82 -0.34 7.06 14 20 H 0.14 2.22 7.61 -52.49 -0.40 1.82 14 21 H 0.14 1.19 8.06 -52.48 -0.42 0.77 14 22 H 0.14 1.22 8.06 -52.49 -0.42 0.80 14 23 H 0.15 2.51 7.65 -52.49 -0.40 2.11 14 LS Contribution 227.19 15.07 3.42 3.42 Total: -1.00 -30.96 227.19 -4.21 -35.17 By element: Atomic # 1 Polarization: 0.42 SS G_CDS: -1.15 Total: -0.73 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.96 Total: -6.38 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.77 Total: -24.14 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.47 Total: -21.06 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.86 Total: 15.67 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -30.96 -4.21 -35.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307755755.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.857 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds