Wall clock time and date at job start Thu Apr 9 2020 11:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86797 * 119.99694 * 2 1 4 4 H 1.48509 * 109.46851 * 269.99663 * 3 2 1 5 5 H 1.48497 * 109.47567 * 29.99428 * 3 2 1 6 6 H 1.48496 * 109.47140 * 149.99965 * 3 2 1 7 7 C 1.38813 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99893 * 0.02562 * 7 2 1 9 9 O 1.34848 * 119.99769 * 179.97438 * 7 2 1 10 10 C 1.34729 * 117.00244 * 180.02562 * 9 7 2 11 11 O 1.21517 * 119.99750 * 0.02562 * 10 9 7 12 12 C 1.47670 * 120.00365 * 180.02562 * 10 9 7 13 13 C 1.39681 * 120.13901 * 359.97438 * 12 10 9 14 14 C 1.37920 * 119.89175 * 180.02562 * 13 12 10 15 15 C 1.38362 * 120.18796 * 359.97438 * 14 13 12 16 16 C 1.38566 * 120.28003 * 0.02562 * 15 14 13 17 17 F 1.35101 * 119.94736 * 179.97438 * 16 15 14 18 18 C 1.38188 * 120.10629 * 359.97438 * 16 15 14 19 19 H 0.96995 * 119.99889 * 0.02562 * 1 2 3 20 20 H 1.07992 * 120.05172 * 359.97438 * 13 12 10 21 21 H 1.08003 * 119.90433 * 180.02562 * 14 13 12 22 22 H 1.08000 * 119.85703 * 179.97438 * 15 14 13 23 23 H 1.07990 * 120.09339 * 180.27878 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0083 -1.2022 0.0005 8 1 1.4683 -2.1374 0.0005 9 8 3.3568 -1.2021 0.0000 10 6 3.9685 -2.4025 0.0000 11 8 3.3067 -3.4217 0.0001 12 6 5.4432 -2.4798 0.0001 13 6 6.2068 -1.3101 -0.0005 14 6 7.5838 -1.3882 -0.0010 15 6 8.2107 -2.6217 -0.0004 16 6 7.4605 -3.7867 0.0001 17 9 8.0796 -4.9875 0.0001 18 6 6.0801 -3.7223 0.0006 19 1 -0.4850 0.8400 -0.0004 20 1 5.7197 -0.3463 -0.0014 21 1 8.1744 -0.4840 -0.0010 22 1 9.2893 -2.6766 -0.0013 23 1 5.4957 -4.6304 0.0056 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307755755.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:33 Heat of formation + Delta-G solvation = -118.892036 kcal Electronic energy + Delta-G solvation = -12927.557530 eV Core-core repulsion = 10233.981292 eV Total energy + Delta-G solvation = -2693.576238 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.048 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.96836 -41.44666 -39.57060 -37.46069 -34.58505 -32.46409 -31.64672 -27.97149 -25.18598 -23.64251 -21.98509 -20.25798 -19.43977 -17.89137 -17.23270 -17.07975 -16.92570 -16.61536 -16.55310 -15.88647 -14.85599 -14.58443 -14.32734 -14.11607 -13.67140 -13.11938 -12.94131 -12.51779 -12.42290 -12.25538 -11.86705 -11.32525 -10.88175 -10.22622 -9.85753 -8.60240 -6.46617 -0.42115 0.10068 1.33693 1.34936 1.54197 1.62507 2.13774 2.27367 2.58488 2.91794 3.21702 3.73239 3.86702 4.06047 4.09919 4.26572 4.72612 4.95270 5.02257 5.21650 5.26429 5.40640 5.77101 5.82562 6.41001 6.73300 7.45196 8.52181 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.053109 B = 0.008506 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.089006 B = 3291.036515 C = 3808.283753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 0.985 3.015 4 H -0.256 1.256 5 H -0.264 1.264 6 H -0.241 1.241 7 C -0.412 4.412 8 H 0.056 0.944 9 O -0.239 6.239 10 C 0.444 3.556 11 O -0.575 6.575 12 C -0.093 4.093 13 C -0.085 4.085 14 C -0.081 4.081 15 C -0.109 4.109 16 C 0.083 3.917 17 F -0.139 7.139 18 C -0.116 4.116 19 H 0.292 0.708 20 H 0.145 0.855 21 H 0.188 0.812 22 H 0.182 0.818 23 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.275 2.285 0.024 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.189 1.189 6 H -0.164 1.164 7 C -0.487 4.487 8 H 0.074 0.926 9 O -0.147 6.147 10 C 0.294 3.706 11 O -0.473 6.473 12 C -0.094 4.094 13 C -0.103 4.103 14 C -0.099 4.099 15 C -0.127 4.127 16 C 0.064 3.936 17 F -0.118 7.118 18 C -0.135 4.135 19 H 0.102 0.898 20 H 0.163 0.837 21 H 0.205 0.795 22 H 0.199 0.801 23 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 18.904 2.095 0.029 19.019 hybrid contribution -0.915 -0.446 -0.019 1.019 sum 17.988 1.649 0.010 18.064 Atomic orbital electron populations 1.69689 1.07784 1.30622 1.46832 1.25692 0.96046 1.03006 0.93699 0.85060 0.79386 0.75052 0.80145 1.18056 1.18878 1.16386 1.20384 0.77476 0.96038 1.54820 0.92588 1.83505 1.22150 1.31542 1.77522 1.21586 0.89922 0.81764 0.77369 1.90653 1.68074 1.37239 1.51342 1.18886 0.87813 0.95507 1.07208 1.21805 0.95341 0.97485 0.95680 1.21468 0.92617 0.99124 0.96664 1.21806 1.02630 0.89974 0.98331 1.17519 0.89336 0.81842 1.04912 1.91504 1.82444 1.43661 1.94172 1.21106 0.94006 0.97823 1.00582 0.89757 0.83703 0.79502 0.80116 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.63 13.96 21.64 0.30 -54.32 14 2 C 0.02 0.94 5.50 84.89 0.47 1.41 14 3 Si 0.99 41.85 28.62 68.60 1.96 43.81 14 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 14 5 H -0.26 -10.47 7.11 99.48 0.71 -9.76 14 6 H -0.24 -9.46 7.11 99.48 0.71 -8.75 14 7 C -0.41 -25.56 10.11 67.96 0.69 -24.88 14 8 H 0.06 3.98 7.09 -2.91 -0.02 3.96 14 9 O -0.24 -12.85 7.82 11.43 0.09 -12.76 14 10 C 0.44 22.50 7.84 70.31 0.55 23.05 14 11 O -0.58 -33.52 15.59 19.78 0.31 -33.22 14 12 C -0.09 -3.46 5.87 -20.10 -0.12 -3.58 14 13 C -0.08 -2.37 9.62 22.54 0.22 -2.15 14 14 C -0.08 -1.46 10.03 22.22 0.22 -1.23 14 15 C -0.11 -1.95 10.02 22.38 0.22 -1.72 14 16 C 0.08 2.13 7.29 22.34 0.16 2.29 14 17 F -0.14 -3.56 17.26 44.97 0.78 -2.79 14 18 C -0.12 -3.87 9.58 22.59 0.22 -3.65 14 19 H 0.29 15.67 8.31 -92.71 -0.77 14.90 14 20 H 0.15 4.01 7.61 -2.91 -0.02 3.99 14 21 H 0.19 1.64 8.06 -2.91 -0.02 1.62 14 22 H 0.18 1.75 8.06 -2.91 -0.02 1.73 14 23 H 0.13 4.64 7.65 -2.92 -0.02 4.62 14 Total: -1.00 -74.27 227.19 7.31 -66.96 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: 1.24 Total: 2.78 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 2.63 Total: -10.46 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.30 Total: -54.32 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: 0.40 Total: -45.98 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.79 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.96 Total: 43.81 kcal Total: -74.27 7.31 -66.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307755755.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.930 kcal (2) G-P(sol) polarization free energy of solvation -74.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds