Wall clock time and date at job start Thu Apr 9 2020 11:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48489 * 109.47290 * 270.00041 * 3 2 1 5 5 H 1.48502 * 109.46941 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46977 * 149.99594 * 3 2 1 7 7 C 1.37879 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00541 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99622 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47146 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00080 * 179.97438 * 11 10 9 13 13 H 1.09004 * 112.85396 * 23.80718 * 12 11 10 14 14 C 1.53784 * 113.61878 * 252.49878 * 12 11 10 15 15 C 1.54054 * 87.07913 * 220.02365 * 14 12 11 16 16 C 1.53784 * 113.61430 * 154.99804 * 12 11 10 17 17 H 1.08998 * 113.61884 * 254.61310 * 16 12 11 18 18 C 1.53006 * 113.61359 * 25.43717 * 16 12 11 19 19 C 1.53000 * 117.49776 * 178.46911 * 18 16 12 20 20 C 1.52997 * 117.49537 * 247.09365 * 18 16 12 21 21 H 0.97001 * 120.00203 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47128 * 60.00616 * 9 7 2 23 23 H 1.08997 * 109.46968 * 299.99836 * 9 7 2 24 24 H 1.09002 * 109.47398 * 59.99732 * 10 9 7 25 25 H 1.09007 * 109.47230 * 300.00285 * 10 9 7 26 26 H 1.00903 * 111.00072 * 56.04512 * 11 10 9 27 27 H 1.09001 * 113.61110 * 334.56730 * 14 12 11 28 28 H 1.08998 * 113.61480 * 105.38415 * 14 12 11 29 29 H 1.09000 * 113.61150 * 270.92260 * 15 14 12 30 30 H 1.08997 * 113.69508 * 139.94174 * 15 14 12 31 31 H 1.09002 * 115.56020 * 32.77494 * 18 16 12 32 32 H 1.08990 * 117.49990 * 359.97438 * 19 18 16 33 33 H 1.09004 * 117.49237 * 214.97568 * 19 18 16 34 34 H 1.08999 * 117.49685 * 145.02116 * 20 18 16 35 35 H 1.08999 * 117.52022 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4905 -2.6366 0.0009 12 6 6.0169 -4.0080 0.0014 13 1 5.3106 -4.7327 -0.4037 14 6 6.6333 -4.4309 1.3454 15 6 7.7371 -5.1301 0.5293 16 6 7.4298 -4.1257 -0.5941 17 1 7.4483 -4.5664 -1.5908 18 6 8.2440 -2.8336 -0.5006 19 6 9.6774 -2.8616 -1.0347 20 6 8.5868 -2.1185 -1.8090 21 1 -0.4850 0.8400 0.0004 22 1 3.8745 -0.6802 0.8912 23 1 3.8751 -0.6805 -0.8888 24 1 3.6585 -3.1503 -0.8892 25 1 3.6578 -3.1507 0.8907 26 1 5.8522 -2.1106 0.7823 27 1 6.9955 -3.5938 1.9422 28 1 6.0082 -5.1180 1.9155 29 1 7.5006 -6.1619 0.2692 30 1 8.7343 -5.0176 0.9547 31 1 8.0448 -2.2145 0.3742 32 1 10.0406 -3.8006 -1.4523 33 1 10.4213 -2.2609 -0.5113 34 1 8.6133 -1.0289 -1.7950 35 1 8.2330 -2.5684 -2.7365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308160013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:34 Heat of formation + Delta-G solvation = 32.137083 kcal Electronic energy + Delta-G solvation = -13658.615995 eV Core-core repulsion = 11464.434027 eV Total energy + Delta-G solvation = -2194.181968 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.66258 -36.09859 -34.45943 -32.39652 -29.40308 -25.84919 -24.84907 -22.80407 -22.11560 -21.93029 -20.30027 -18.33850 -16.76466 -16.11408 -15.46426 -14.63928 -14.25354 -13.88120 -13.52780 -13.43840 -12.64298 -12.50102 -12.27196 -11.84773 -11.47617 -11.32043 -11.12393 -10.97109 -10.69584 -10.36136 -10.25062 -9.93132 -9.78557 -9.74504 -9.40002 -9.19500 -8.51409 -7.77588 -6.02324 -4.00323 3.34435 3.40991 3.45992 3.89334 4.48240 4.57634 4.59737 4.75716 4.87387 5.03123 5.22075 5.24539 5.32445 5.35388 5.59678 5.68503 5.72433 5.80913 5.93170 5.96333 6.02171 6.16610 6.21028 6.30520 6.34593 6.42718 6.48255 6.82331 7.20577 7.43473 7.68513 7.80931 7.97616 8.55944 9.02068 9.60376 11.11154 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040347 B = 0.006752 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.817083 B = 4146.041528 C = 4629.758572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.677 5.677 12 C 0.075 3.925 13 H 0.093 0.907 14 C -0.169 4.169 15 C -0.135 4.135 16 C -0.071 4.071 17 H 0.071 0.929 18 C -0.109 4.109 19 C -0.192 4.192 20 C -0.167 4.167 21 H 0.263 0.737 22 H 0.012 0.988 23 H 0.020 0.980 24 H 0.062 0.938 25 H 0.021 0.979 26 H 0.335 0.665 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.606 -7.330 0.233 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.306 5.306 12 C -0.036 4.036 13 H 0.111 0.889 14 C -0.208 4.208 15 C -0.173 4.173 16 C -0.090 4.090 17 H 0.089 0.911 18 C -0.127 4.127 19 C -0.229 4.229 20 C -0.204 4.204 21 H 0.072 0.928 22 H 0.030 0.970 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.039 0.961 26 H 0.154 0.846 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.467 -7.124 -0.457 18.869 hybrid contribution 0.091 0.635 0.909 1.113 sum 17.558 -6.489 0.452 18.724 Atomic orbital electron populations 1.69918 1.06326 1.26881 1.51288 1.25010 0.94723 0.99205 0.94520 0.86729 0.80264 0.83430 0.78550 1.20266 1.21533 1.19010 1.21092 0.89478 0.94474 1.50833 0.91158 1.19545 0.96590 0.92034 0.96620 1.21981 0.84428 0.99844 0.99274 1.60500 1.09467 1.11505 1.49162 1.22998 0.94651 0.91336 0.94619 0.88893 1.23699 0.98536 1.00777 0.97838 1.22811 0.98875 0.98026 0.97612 1.22097 0.95303 0.93653 0.97995 0.91102 1.21671 0.94996 0.97887 0.98130 1.22950 0.92201 1.02382 1.05402 1.22835 1.02420 0.99182 0.95991 0.92762 0.96979 0.96131 0.91900 0.96115 0.84643 0.90198 0.91905 0.90433 0.91427 0.88107 0.89337 0.89392 0.89089 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.33 13.96 55.43 0.77 -27.55 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 10 C 0.07 1.49 5.47 -3.82 -0.02 1.47 16 11 N -0.68 -11.43 5.78 -105.86 -0.61 -12.04 16 12 C 0.08 1.05 4.07 -66.90 -0.27 0.78 16 13 H 0.09 1.33 7.87 -51.93 -0.41 0.92 16 14 C -0.17 -2.03 7.41 -25.77 -0.19 -2.22 16 15 C -0.14 -1.43 7.69 -25.77 -0.20 -1.63 16 16 C -0.07 -0.86 3.97 -89.80 -0.36 -1.22 16 17 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 18 C -0.11 -1.31 4.46 -90.62 -0.40 -1.72 16 19 C -0.19 -2.01 10.25 -26.73 -0.27 -2.28 16 20 C -0.17 -2.00 10.24 -26.73 -0.27 -2.27 16 21 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 22 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 23 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 24 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.34 5.43 7.67 -39.29 -0.30 5.13 16 27 H 0.08 0.95 7.62 -51.93 -0.40 0.56 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.10 1.28 7.32 -51.93 -0.38 0.90 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -30.22 283.85 -8.83 -39.06 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.06 Total: 1.75 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.54 Total: -23.04 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.16 Total: -39.60 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.22 -8.83 -39.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.194 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds