Wall clock time and date at job start Thu Apr 9 2020 11:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00057 * 2 1 4 4 H 1.48489 * 109.47290 * 270.00041 * 3 2 1 5 5 H 1.48502 * 109.46941 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46977 * 149.99594 * 3 2 1 7 7 C 1.37879 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00541 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99622 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47146 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47378 * 179.97438 * 10 9 7 12 12 C 1.46893 * 111.00080 * 179.97438 * 11 10 9 13 13 H 1.09004 * 112.85396 * 23.80718 * 12 11 10 14 14 C 1.53784 * 113.61878 * 252.49878 * 12 11 10 15 15 C 1.54054 * 87.07913 * 220.02365 * 14 12 11 16 16 C 1.53784 * 113.61430 * 154.99804 * 12 11 10 17 17 H 1.08998 * 113.61884 * 254.61310 * 16 12 11 18 18 C 1.53006 * 113.61359 * 25.43717 * 16 12 11 19 19 C 1.53000 * 117.49776 * 178.46911 * 18 16 12 20 20 C 1.52997 * 117.49537 * 247.09365 * 18 16 12 21 21 H 0.97001 * 120.00203 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47128 * 60.00616 * 9 7 2 23 23 H 1.08997 * 109.46968 * 299.99836 * 9 7 2 24 24 H 1.09002 * 109.47398 * 59.99732 * 10 9 7 25 25 H 1.09007 * 109.47230 * 300.00285 * 10 9 7 26 26 H 1.00903 * 111.00072 * 56.04512 * 11 10 9 27 27 H 1.09001 * 113.61110 * 334.56730 * 14 12 11 28 28 H 1.08998 * 113.61480 * 105.38415 * 14 12 11 29 29 H 1.09000 * 113.61150 * 270.92260 * 15 14 12 30 30 H 1.08997 * 113.69508 * 139.94174 * 15 14 12 31 31 H 1.09002 * 115.56020 * 32.77494 * 18 16 12 32 32 H 1.08990 * 117.49990 * 359.97438 * 19 18 16 33 33 H 1.09004 * 117.49237 * 214.97568 * 19 18 16 34 34 H 1.08999 * 117.49685 * 145.02116 * 20 18 16 35 35 H 1.08999 * 117.52022 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4905 -2.6366 0.0009 12 6 6.0169 -4.0080 0.0014 13 1 5.3106 -4.7327 -0.4037 14 6 6.6333 -4.4309 1.3454 15 6 7.7371 -5.1301 0.5293 16 6 7.4298 -4.1257 -0.5941 17 1 7.4483 -4.5664 -1.5908 18 6 8.2440 -2.8336 -0.5006 19 6 9.6774 -2.8616 -1.0347 20 6 8.5868 -2.1185 -1.8090 21 1 -0.4850 0.8400 0.0004 22 1 3.8745 -0.6802 0.8912 23 1 3.8751 -0.6805 -0.8888 24 1 3.6585 -3.1503 -0.8892 25 1 3.6578 -3.1507 0.8907 26 1 5.8522 -2.1106 0.7823 27 1 6.9955 -3.5938 1.9422 28 1 6.0082 -5.1180 1.9155 29 1 7.5006 -6.1619 0.2692 30 1 8.7343 -5.0176 0.9547 31 1 8.0448 -2.2145 0.3742 32 1 10.0406 -3.8006 -1.4523 33 1 10.4213 -2.2609 -0.5113 34 1 8.6133 -1.0289 -1.7950 35 1 8.2330 -2.5684 -2.7365 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308160013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:34 Heat of formation + Delta-G solvation = 13.908732 kcal Electronic energy + Delta-G solvation = -13659.406436 eV Core-core repulsion = 11464.434027 eV Total energy + Delta-G solvation = -2194.972408 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67402 -37.19352 -36.02015 -34.41185 -31.25147 -26.81042 -26.51294 -24.16367 -22.99200 -22.98442 -22.06917 -19.37371 -18.92999 -17.19334 -16.64836 -16.21719 -15.89561 -15.17495 -15.01886 -14.59386 -14.43955 -13.80942 -13.53926 -13.21358 -12.91352 -12.71368 -12.35266 -12.29679 -12.09120 -11.78412 -11.62154 -11.42759 -11.36222 -11.25839 -10.81803 -10.77062 -10.49212 -9.13301 -8.30934 -6.35435 1.36532 1.37558 1.50417 2.35931 3.00712 3.04735 3.35306 3.63821 3.79782 3.93208 4.05409 4.25611 4.30736 4.40994 4.47255 4.57483 4.69861 4.73032 4.86928 4.90234 4.97140 5.02731 5.10935 5.14118 5.28552 5.30152 5.36322 5.47863 5.50696 5.54976 5.63762 6.22618 6.29510 6.58887 6.74062 7.29556 8.85935 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040347 B = 0.006752 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.817083 B = 4146.041528 C = 4629.758572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.003 4.003 10 C 0.088 3.912 11 N -0.675 5.675 12 C 0.060 3.940 13 H 0.085 0.915 14 C -0.165 4.165 15 C -0.120 4.120 16 C -0.066 4.066 17 H 0.070 0.930 18 C -0.120 4.120 19 C -0.171 4.171 20 C -0.182 4.182 21 H 0.267 0.733 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.051 0.949 25 H 0.014 0.986 26 H 0.341 0.659 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.276 -7.032 0.544 21.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.041 4.041 10 C -0.041 4.041 11 N -0.305 5.305 12 C -0.050 4.050 13 H 0.104 0.896 14 C -0.204 4.204 15 C -0.158 4.158 16 C -0.086 4.086 17 H 0.088 0.912 18 C -0.139 4.139 19 C -0.208 4.208 20 C -0.220 4.220 21 H 0.076 0.924 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.159 0.841 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 20.162 -6.850 -0.144 21.294 hybrid contribution -0.792 0.458 0.797 1.213 sum 19.370 -6.392 0.653 20.408 Atomic orbital electron populations 1.70067 1.08312 1.28243 1.52584 1.26007 0.95623 1.03565 0.93957 0.85588 0.79411 0.78028 0.79162 1.19344 1.20828 1.17034 1.21433 0.92043 0.93176 1.50653 0.95100 1.19427 0.93448 0.94626 0.96606 1.21631 0.86940 0.97083 0.98475 1.60437 1.06756 1.13695 1.49611 1.23187 0.95521 0.89514 0.96825 0.89638 1.23651 0.98856 1.01049 0.96834 1.22766 0.98974 0.98058 0.96026 1.22065 0.93682 0.94331 0.98500 0.91162 1.21672 0.96546 0.97783 0.97874 1.23001 0.91397 1.02527 1.03833 1.22874 1.03992 0.99209 0.95881 0.92418 0.96318 0.96185 0.93019 0.96775 0.84058 0.89911 0.91801 0.89240 0.90075 0.88696 0.88269 0.88178 0.89377 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 2 C 0.01 0.31 5.47 84.66 0.46 0.78 16 3 Si 0.95 45.41 27.47 68.60 1.88 47.29 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.53 -31.75 9.66 25.60 0.25 -31.50 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.98 16 9 C 0.00 -0.16 4.30 29.85 0.13 -0.03 16 10 C 0.09 3.60 5.47 86.30 0.47 4.07 16 11 N -0.68 -22.10 5.78 -488.84 -2.83 -24.92 16 12 C 0.06 1.60 4.07 45.44 0.19 1.79 16 13 H 0.09 2.40 7.87 -2.38 -0.02 2.38 16 14 C -0.16 -3.61 7.41 31.21 0.23 -3.38 16 15 C -0.12 -2.19 7.69 31.22 0.24 -1.95 16 16 C -0.07 -1.47 3.97 -10.26 -0.04 -1.51 16 17 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 18 C -0.12 -2.64 4.46 -10.79 -0.05 -2.69 16 19 C -0.17 -3.06 10.25 30.60 0.31 -2.75 16 20 C -0.18 -4.04 10.24 30.60 0.31 -3.73 16 21 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 22 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 23 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 24 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 25 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.34 10.51 7.67 -89.69 -0.69 9.83 16 27 H 0.08 1.78 7.62 -2.39 -0.02 1.76 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.30 8.10 -2.39 -0.02 1.29 16 31 H 0.09 2.20 7.32 -2.39 -0.02 2.18 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.01 283.85 2.16 -62.85 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.30 Total: 16.17 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.51 Total: -40.91 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -2.53 Total: -85.40 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -65.01 2.16 -62.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.759 kcal (2) G-P(sol) polarization free energy of solvation -65.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds