Wall clock time and date at job start Thu Apr 9 2020 11:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 112.90789 * 2 1 4 4 C 1.53785 * 113.61703 * 228.74842 * 2 1 3 5 5 C 1.53784 * 87.08134 * 220.01799 * 4 2 1 6 6 C 1.53779 * 113.61669 * 131.25078 * 2 1 3 7 7 H 1.09004 * 113.68727 * 25.41952 * 6 2 1 8 8 N 1.46900 * 113.61640 * 254.53296 * 6 2 1 9 9 C 1.46900 * 111.00345 * 173.22812 * 8 6 2 10 10 C 1.52998 * 109.47472 * 186.12517 * 9 8 6 11 11 C 1.50705 * 115.54493 * 304.90706 * 10 9 8 12 12 H 1.08004 * 119.99820 * 272.62697 * 11 10 9 13 13 C 1.37874 * 119.99981 * 92.90478 * 11 10 9 14 14 N 1.31521 * 120.00185 * 179.85510 * 13 11 10 15 15 Si 1.86803 * 120.00217 * 359.85505 * 13 11 10 16 16 H 1.48499 * 109.46808 * 85.31345 * 15 13 11 17 17 H 1.48495 * 109.47412 * 205.31761 * 15 13 11 18 18 H 1.48502 * 109.46859 * 325.31741 * 15 13 11 19 19 C 1.52998 * 117.52161 * 90.60598 * 10 9 8 20 20 C 1.52998 * 117.50150 * 159.24040 * 10 9 8 21 21 H 1.08995 * 109.47076 * 288.74988 * 1 2 3 22 22 H 1.09003 * 109.46459 * 48.74756 * 1 2 3 23 23 H 1.08996 * 109.46801 * 168.74505 * 1 2 3 24 24 H 1.08998 * 113.61210 * 105.47094 * 4 2 1 25 25 H 1.09000 * 113.60920 * 334.56590 * 4 2 1 26 26 H 1.08998 * 113.61500 * 270.88415 * 5 4 2 27 27 H 1.08996 * 113.61099 * 139.97597 * 5 4 2 28 28 H 1.00894 * 111.00196 * 297.18122 * 8 6 2 29 29 H 1.08999 * 109.47229 * 66.11804 * 9 8 6 30 30 H 1.09001 * 109.47015 * 306.12299 * 9 8 6 31 31 H 0.96997 * 119.99843 * 179.97438 * 14 13 11 32 32 H 1.08998 * 117.49790 * 214.96778 * 19 10 9 33 33 H 1.08995 * 117.49790 * 359.97438 * 19 10 9 34 34 H 1.08995 * 117.49627 * 359.97065 * 20 10 9 35 35 H 1.09003 * 117.50014 * 144.96917 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0041 0.0000 4 6 2.1461 -0.9291 -1.0594 5 6 3.1924 -1.3136 0.0000 6 6 2.1461 -0.9290 1.0593 7 1 1.4955 -1.7539 1.3500 8 7 2.7107 -0.2144 2.2119 9 6 3.1369 -1.1546 3.2571 10 6 3.5758 -0.3738 4.4975 11 6 4.6449 0.6633 4.2679 12 1 5.6871 0.3839 4.3146 13 6 4.2925 1.9698 4.0041 14 7 5.2256 2.8755 3.8066 15 14 2.4899 2.4539 3.9272 16 1 1.9994 2.7546 5.2961 17 1 2.3366 3.6573 3.0708 18 1 1.7009 1.3343 3.3534 19 6 2.5123 -0.0701 5.5546 20 6 3.5902 -1.1196 5.8333 21 1 -0.3633 0.3303 0.9731 22 1 -0.3632 0.6777 -0.7727 23 1 -0.3633 -1.0079 -0.2006 24 1 2.5651 -0.3988 -1.9145 25 1 1.4946 -1.7536 -1.3489 26 1 4.0711 -0.6686 0.0001 27 1 3.4444 -2.3740 0.0001 28 1 3.4738 0.3820 1.9292 29 1 3.9711 -1.7524 2.8900 30 1 2.3060 -1.8109 3.5161 31 1 4.9776 3.7946 3.6206 32 1 2.5859 0.8798 6.0842 33 1 1.4995 -0.4262 5.3664 34 1 3.2865 -2.1664 5.8286 35 1 4.3732 -0.8604 6.5460 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308242261.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:40 Heat of formation + Delta-G solvation = 25.051300 kcal Electronic energy + Delta-G solvation = -14390.268839 eV Core-core repulsion = 12195.779608 eV Total energy + Delta-G solvation = -2194.489230 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.29455 -38.64880 -34.21754 -34.13539 -30.49109 -28.01464 -26.70750 -24.22135 -23.54860 -23.08988 -20.91990 -20.20076 -18.24044 -16.84757 -16.59130 -16.00890 -15.59938 -14.99932 -14.64276 -14.51520 -14.25365 -13.94302 -13.62709 -13.21326 -12.98043 -12.58009 -12.43613 -12.31218 -11.98709 -11.79595 -11.66450 -11.39061 -11.15735 -11.00535 -10.84426 -10.53965 -10.17877 -8.75500 -8.22752 -6.32361 1.47639 1.55573 1.91375 2.57254 3.14881 3.16758 3.59689 3.75593 3.89078 3.98684 4.14250 4.22144 4.44567 4.57144 4.62656 4.72324 4.79662 4.82286 4.90263 4.92147 4.94777 4.99476 5.08297 5.14272 5.15745 5.29539 5.40441 5.50705 5.52403 5.63142 5.80256 6.32622 6.50505 6.62665 6.79716 7.41907 8.90293 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.011898 C = 0.010745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.946033 B = 2352.778652 C = 2605.265446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 H 0.067 0.933 4 C -0.120 4.120 5 C -0.178 4.178 6 C 0.066 3.934 7 H 0.108 0.892 8 N -0.678 5.678 9 C 0.113 3.887 10 C -0.017 4.017 11 C -0.490 4.490 12 H 0.024 0.976 13 C 0.033 3.967 14 N -0.955 5.955 15 Si 0.917 3.083 16 H -0.301 1.301 17 H -0.323 1.323 18 H -0.157 1.157 19 C -0.193 4.193 20 C -0.171 4.171 21 H 0.046 0.954 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.338 0.662 29 H 0.017 0.983 30 H 0.073 0.927 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 -9.641 -7.550 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 H 0.086 0.914 4 C -0.158 4.158 5 C -0.218 4.218 6 C -0.045 4.045 7 H 0.126 0.874 8 N -0.308 5.308 9 C -0.016 4.016 10 C -0.019 4.019 11 C -0.528 4.528 12 H 0.042 0.958 13 C -0.164 4.164 14 N -0.594 5.594 15 Si 0.744 3.256 16 H -0.229 1.229 17 H -0.252 1.252 18 H -0.077 1.077 19 C -0.230 4.230 20 C -0.209 4.209 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.158 0.842 29 H 0.036 0.964 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.268 -9.379 -7.294 16.375 hybrid contribution 1.013 0.804 -0.040 1.294 sum -10.255 -8.576 -7.335 15.248 Atomic orbital electron populations 1.21636 0.93660 1.02308 1.01390 1.22668 0.96666 0.98091 0.95802 0.91447 1.22801 0.97595 0.99423 0.95962 1.23619 0.97714 1.01422 0.98997 1.23319 0.96519 0.96400 0.88214 0.87406 1.60618 1.38020 1.21402 1.10725 1.21311 0.96864 0.92483 0.90979 1.19399 0.96128 0.98061 0.88266 1.20423 0.91534 0.92625 1.48186 0.95764 1.25753 1.01681 0.95886 0.93123 1.70076 1.35660 1.02981 1.50722 0.86455 0.83247 0.79366 0.76519 1.22923 1.25226 1.07720 1.22887 0.95016 0.99257 1.05860 1.22902 1.00819 0.96644 1.00504 0.93466 0.92224 0.91275 0.91302 0.88243 0.92156 0.90998 0.84249 0.96440 0.90828 0.93063 0.92109 0.88045 0.87452 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.71 71.98 0.70 -2.27 16 2 C -0.11 -3.01 4.16 -10.27 -0.04 -3.05 16 3 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 4 C -0.12 -2.66 7.63 31.12 0.24 -2.42 16 5 C -0.18 -4.78 7.77 31.12 0.24 -4.54 16 6 C 0.07 1.91 3.53 45.44 0.16 2.07 16 7 H 0.11 2.80 7.96 -2.38 -0.02 2.78 16 8 N -0.68 -25.52 3.45 -488.85 -1.69 -27.21 16 9 C 0.11 4.27 5.61 86.30 0.48 4.75 16 10 C -0.02 -0.78 1.42 -52.93 -0.08 -0.86 16 11 C -0.49 -27.81 8.76 25.60 0.22 -27.58 16 12 H 0.02 1.56 8.06 -2.91 -0.02 1.53 16 13 C 0.03 1.93 5.10 84.65 0.43 2.36 16 14 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 15 Si 0.92 45.32 23.23 68.60 1.59 46.91 16 16 H -0.30 -15.09 6.78 99.48 0.67 -14.42 16 17 H -0.32 -16.62 7.11 99.48 0.71 -15.91 16 18 H -0.16 -6.88 5.21 99.48 0.52 -6.36 16 19 C -0.19 -7.97 7.40 30.60 0.23 -7.74 16 20 C -0.17 -6.68 9.95 30.60 0.30 -6.37 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.28 7.94 -2.39 -0.02 1.26 16 24 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.10 1.77 7.96 -2.39 -0.02 1.75 16 26 H 0.06 1.88 7.95 -2.39 -0.02 1.86 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.34 14.75 6.90 -89.70 -0.62 14.13 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 2.39 7.98 -2.39 -0.02 2.37 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.06 2.79 6.34 -2.39 -0.02 2.78 16 33 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -64.73 273.46 3.30 -61.42 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.20 Total: 24.99 kcal Atomic # 6 Polarization: -48.54 SS G_CDS: 2.89 Total: -45.65 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: -1.39 Total: -87.67 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.59 Total: 46.91 kcal Total: -64.73 3.30 -61.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308242261.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.475 kcal (2) G-P(sol) polarization free energy of solvation -64.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds