Wall clock time and date at job start Thu Apr 9 2020 11:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 112.90913 * 2 1 4 4 C 1.53776 * 113.61438 * 131.25195 * 2 1 3 5 5 C 1.53787 * 87.08397 * 139.98059 * 4 2 1 6 6 C 1.53785 * 113.61429 * 228.75214 * 2 1 3 7 7 H 1.09001 * 113.68841 * 334.56962 * 6 2 1 8 8 N 1.46898 * 113.61661 * 105.46982 * 6 2 1 9 9 C 1.46899 * 111.00019 * 202.00051 * 8 6 2 10 10 C 1.52998 * 109.47072 * 184.58472 * 9 8 6 11 11 C 1.50696 * 115.56574 * 38.73784 * 10 9 8 12 12 H 1.08003 * 120.00058 * 260.35271 * 11 10 9 13 13 C 1.37874 * 120.00143 * 80.33866 * 11 10 9 14 14 N 1.31514 * 120.00196 * 351.40525 * 13 11 10 15 15 Si 1.86803 * 119.99973 * 171.40170 * 13 11 10 16 16 H 1.48503 * 109.47031 * 60.00534 * 15 13 11 17 17 H 1.48506 * 109.47304 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47235 * 300.00318 * 15 13 11 19 19 C 1.53003 * 117.49533 * 184.42441 * 10 9 8 20 20 C 1.53004 * 60.02992 * 107.50284 * 19 10 9 21 21 H 1.09004 * 109.46793 * 191.24905 * 1 2 3 22 22 H 1.08995 * 109.47068 * 311.24826 * 1 2 3 23 23 H 1.08998 * 109.47170 * 71.25056 * 1 2 3 24 24 H 1.08999 * 113.61500 * 25.43268 * 4 2 1 25 25 H 1.08996 * 113.69476 * 254.54015 * 4 2 1 26 26 H 1.08990 * 113.61657 * 220.02004 * 5 4 2 27 27 H 1.09003 * 113.68850 * 89.12551 * 5 4 2 28 28 H 1.00897 * 111.00092 * 325.95213 * 8 6 2 29 29 H 1.09005 * 109.47314 * 64.58227 * 9 8 6 30 30 H 1.09004 * 109.47302 * 304.58823 * 9 8 6 31 31 H 0.97001 * 120.00179 * 179.97438 * 14 13 11 32 32 H 1.08999 * 117.50049 * 0.02562 * 19 10 9 33 33 H 1.08997 * 117.49743 * 214.99967 * 19 10 9 34 34 H 1.08995 * 117.50172 * 107.48090 * 20 19 10 35 35 H 1.09003 * 117.49270 * 252.47173 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 3.1924 -1.3136 0.0000 6 6 2.1460 -0.9290 -1.0594 7 1 1.4955 -1.7539 -1.3500 8 7 2.7107 -0.2144 -2.2120 9 6 2.8016 -1.0949 -3.3843 10 6 3.4971 -0.3524 -4.5271 11 6 4.6469 0.5336 -4.1223 12 1 4.4986 1.5987 -4.0219 13 6 5.8881 -0.0154 -3.8799 14 7 6.0320 -1.3219 -3.8355 15 14 7.3656 1.0965 -3.6146 16 1 7.1233 1.9692 -2.4377 17 1 8.5734 0.2662 -3.3755 18 1 7.5747 1.9380 -4.8202 19 6 3.5968 -1.0668 -5.8764 20 6 2.6308 0.1069 -5.7026 21 1 -0.3633 -1.0080 0.2005 22 1 -0.3633 0.6775 0.7726 23 1 -0.3633 0.3303 -0.9731 24 1 1.4945 -1.7535 1.3489 25 1 2.5652 -0.4002 1.9152 26 1 3.4443 -2.3740 -0.0001 27 1 4.0718 -0.6696 -0.0010 28 1 2.1739 0.6136 -2.4224 29 1 1.7993 -1.3873 -3.6978 30 1 3.3757 -1.9849 -3.1267 31 1 6.9054 -1.7081 -3.6653 32 1 3.1665 -2.0656 -5.9500 33 1 4.4941 -0.8962 -6.4711 34 1 2.8929 1.0497 -6.1826 35 1 1.5654 -0.1199 -5.6622 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308242262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:41 Heat of formation + Delta-G solvation = 36.836848 kcal Electronic energy + Delta-G solvation = -14147.783871 eV Core-core repulsion = 11953.805700 eV Total energy + Delta-G solvation = -2193.978171 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.82276 -36.56121 -32.53477 -31.72912 -29.48927 -25.82538 -24.81579 -22.95440 -21.94581 -21.01985 -19.27346 -18.59529 -15.93157 -15.40072 -14.53312 -14.32741 -14.15472 -13.47110 -13.01672 -12.95197 -12.64347 -12.48666 -11.57389 -11.41105 -11.29776 -10.86217 -10.84840 -10.66071 -10.44431 -10.38278 -10.12651 -9.97335 -9.68286 -9.25568 -8.70949 -8.23487 -7.94594 -7.26906 -5.83576 -3.82717 3.42818 3.46467 3.49719 4.57166 4.86727 4.97272 5.04215 5.34784 5.43751 5.46725 5.51219 5.65220 5.80889 5.91757 5.96503 6.07090 6.15894 6.25311 6.36489 6.41550 6.53831 6.59296 6.69445 6.77959 6.78883 6.90225 7.08888 7.16813 7.50973 7.59030 8.07773 8.22903 8.42047 8.66860 9.11796 9.78831 11.27297 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.010409 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.374489 B = 2689.432104 C = 3275.344183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.140 4.140 5 C -0.123 4.123 6 C 0.067 3.933 7 H 0.055 0.945 8 N -0.643 5.643 9 C 0.110 3.890 10 C 0.053 3.947 11 C -0.464 4.464 12 H 0.055 0.945 13 C 0.075 3.925 14 N -0.881 5.881 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.281 1.281 19 C -0.167 4.167 20 C -0.219 4.219 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.329 0.671 29 H -0.011 1.011 30 H 0.071 0.929 31 H 0.255 0.745 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 0.388 6.077 10.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 H 0.113 0.887 4 C -0.178 4.178 5 C -0.161 4.161 6 C -0.044 4.044 7 H 0.073 0.927 8 N -0.272 5.272 9 C -0.019 4.019 10 C 0.052 3.948 11 C -0.502 4.502 12 H 0.073 0.927 13 C -0.127 4.127 14 N -0.518 5.518 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.207 1.207 19 C -0.205 4.205 20 C -0.256 4.256 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.147 0.853 29 H 0.007 0.993 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.336 0.127 6.289 9.663 hybrid contribution -0.049 0.356 -0.201 0.412 sum -7.384 0.484 6.088 9.583 Atomic orbital electron populations 1.21742 0.95690 1.01173 1.01262 1.22801 0.94500 0.99365 0.96987 0.88734 1.22852 0.99054 0.99081 0.96777 1.22937 0.97730 1.00897 0.94543 1.23019 0.94765 0.95666 0.90926 0.92726 1.60395 1.54302 1.07627 1.04900 1.21482 0.94242 0.95883 0.90289 1.18917 0.94626 0.96500 0.84767 1.20077 0.91932 0.92308 1.45917 0.92708 1.24820 0.98343 0.94631 0.94871 1.69996 1.23044 1.09714 1.49072 0.86801 0.82612 0.80818 0.78466 1.20333 1.21678 1.20724 1.22554 0.99442 0.93412 1.05060 1.23064 0.94535 0.98719 1.09261 0.93047 0.93029 0.92862 0.90955 0.91922 0.92523 0.89173 0.85286 0.99349 0.91057 0.93517 0.92168 0.90280 0.90626 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.71 37.16 0.36 -1.36 16 2 C -0.12 -1.69 3.96 -89.81 -0.36 -2.04 16 3 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 4 C -0.14 -1.91 7.63 -25.92 -0.20 -2.11 16 5 C -0.12 -2.10 7.88 -25.91 -0.20 -2.30 16 6 C 0.07 1.17 3.66 -66.90 -0.24 0.92 16 7 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 8 N -0.64 -13.37 5.82 -105.86 -0.62 -13.99 16 9 C 0.11 2.52 5.62 -3.83 -0.02 2.50 16 10 C 0.05 1.30 1.65 -155.62 -0.26 1.04 16 11 C -0.46 -12.67 8.11 -34.44 -0.28 -12.95 16 12 H 0.05 1.51 7.83 -52.48 -0.41 1.10 16 13 C 0.08 2.10 5.41 -17.82 -0.10 2.00 16 14 N -0.88 -25.35 13.20 55.43 0.73 -24.61 16 15 Si 0.88 21.73 29.55 -169.99 -5.02 16.71 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C -0.17 -3.97 9.79 -26.73 -0.26 -4.24 16 20 C -0.22 -4.83 9.88 -26.69 -0.26 -5.09 16 21 H 0.05 0.59 7.94 -51.93 -0.41 0.18 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.90 7.96 -51.93 -0.41 0.48 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.33 6.53 8.63 -39.29 -0.34 6.19 16 29 H -0.01 -0.24 7.94 -51.93 -0.41 -0.66 16 30 H 0.07 1.82 8.13 -51.93 -0.42 1.39 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 34 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 LS Contribution 289.17 15.07 4.36 4.36 Total: -1.00 -28.09 289.17 -8.55 -36.64 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -6.18 Total: 4.52 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -1.82 Total: -23.62 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.12 Total: -38.60 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.09 -8.55 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308242262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.473 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds