Wall clock time and date at job start Thu Apr 9 2020 11:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 112.90913 * 2 1 4 4 C 1.53776 * 113.61438 * 131.25195 * 2 1 3 5 5 C 1.53787 * 87.08397 * 139.98059 * 4 2 1 6 6 C 1.53785 * 113.61429 * 228.75214 * 2 1 3 7 7 H 1.09001 * 113.68841 * 334.56962 * 6 2 1 8 8 N 1.46898 * 113.61661 * 105.46982 * 6 2 1 9 9 C 1.46899 * 111.00019 * 202.00051 * 8 6 2 10 10 C 1.52998 * 109.47072 * 184.58472 * 9 8 6 11 11 C 1.50696 * 115.56574 * 38.73784 * 10 9 8 12 12 H 1.08003 * 120.00058 * 260.35271 * 11 10 9 13 13 C 1.37874 * 120.00143 * 80.33866 * 11 10 9 14 14 N 1.31514 * 120.00196 * 351.40525 * 13 11 10 15 15 Si 1.86803 * 119.99973 * 171.40170 * 13 11 10 16 16 H 1.48503 * 109.47031 * 60.00534 * 15 13 11 17 17 H 1.48506 * 109.47304 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47235 * 300.00318 * 15 13 11 19 19 C 1.53003 * 117.49533 * 184.42441 * 10 9 8 20 20 C 1.53004 * 60.02992 * 107.50284 * 19 10 9 21 21 H 1.09004 * 109.46793 * 191.24905 * 1 2 3 22 22 H 1.08995 * 109.47068 * 311.24826 * 1 2 3 23 23 H 1.08998 * 109.47170 * 71.25056 * 1 2 3 24 24 H 1.08999 * 113.61500 * 25.43268 * 4 2 1 25 25 H 1.08996 * 113.69476 * 254.54015 * 4 2 1 26 26 H 1.08990 * 113.61657 * 220.02004 * 5 4 2 27 27 H 1.09003 * 113.68850 * 89.12551 * 5 4 2 28 28 H 1.00897 * 111.00092 * 325.95213 * 8 6 2 29 29 H 1.09005 * 109.47314 * 64.58227 * 9 8 6 30 30 H 1.09004 * 109.47302 * 304.58823 * 9 8 6 31 31 H 0.97001 * 120.00179 * 179.97438 * 14 13 11 32 32 H 1.08999 * 117.50049 * 0.02562 * 19 10 9 33 33 H 1.08997 * 117.49743 * 214.99967 * 19 10 9 34 34 H 1.08995 * 117.50172 * 107.48090 * 20 19 10 35 35 H 1.09003 * 117.49270 * 252.47173 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9543 1.0040 0.0000 4 6 2.1460 -0.9290 1.0593 5 6 3.1924 -1.3136 0.0000 6 6 2.1460 -0.9290 -1.0594 7 1 1.4955 -1.7539 -1.3500 8 7 2.7107 -0.2144 -2.2120 9 6 2.8016 -1.0949 -3.3843 10 6 3.4971 -0.3524 -4.5271 11 6 4.6469 0.5336 -4.1223 12 1 4.4986 1.5987 -4.0219 13 6 5.8881 -0.0154 -3.8799 14 7 6.0320 -1.3219 -3.8355 15 14 7.3656 1.0965 -3.6146 16 1 7.1233 1.9692 -2.4377 17 1 8.5734 0.2662 -3.3755 18 1 7.5747 1.9380 -4.8202 19 6 3.5968 -1.0668 -5.8764 20 6 2.6308 0.1069 -5.7026 21 1 -0.3633 -1.0080 0.2005 22 1 -0.3633 0.6775 0.7726 23 1 -0.3633 0.3303 -0.9731 24 1 1.4945 -1.7535 1.3489 25 1 2.5652 -0.4002 1.9152 26 1 3.4443 -2.3740 -0.0001 27 1 4.0718 -0.6696 -0.0010 28 1 2.1739 0.6136 -2.4224 29 1 1.7993 -1.3873 -3.6978 30 1 3.3757 -1.9849 -3.1267 31 1 6.9054 -1.7081 -3.6653 32 1 3.1665 -2.0656 -5.9500 33 1 4.4941 -0.8962 -6.4711 34 1 2.8929 1.0497 -6.1826 35 1 1.5654 -0.1199 -5.6622 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308242262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:41 Heat of formation + Delta-G solvation = 21.052689 kcal Electronic energy + Delta-G solvation = -14148.468323 eV Core-core repulsion = 11953.805700 eV Total energy + Delta-G solvation = -2194.662623 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14417 -38.38911 -34.17137 -33.81649 -30.57470 -27.71438 -26.64919 -24.26664 -23.29805 -22.85705 -21.03050 -20.08050 -17.89363 -16.92115 -16.48696 -15.96219 -15.56749 -15.04784 -14.68298 -14.29697 -13.92926 -13.88527 -13.45604 -13.15531 -12.83653 -12.63738 -12.41510 -12.38813 -12.11902 -11.95614 -11.75883 -11.44969 -11.00736 -10.90572 -10.65451 -10.28885 -9.85816 -8.87861 -7.96117 -5.99461 1.45382 1.46054 1.52143 2.52302 3.33830 3.44758 3.62455 3.73098 3.81676 4.10425 4.14084 4.43724 4.52726 4.60147 4.63939 4.74622 4.79474 4.82772 4.92650 4.99680 5.02536 5.09874 5.15810 5.20257 5.28794 5.31711 5.55361 5.58818 5.64862 5.76064 5.92600 6.46470 6.67640 6.88068 7.01801 7.64063 9.13557 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027597 B = 0.010409 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.374489 B = 2689.432104 C = 3275.344183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.134 4.134 6 C 0.058 3.942 7 H 0.058 0.942 8 N -0.659 5.659 9 C 0.125 3.875 10 C 0.023 3.977 11 C -0.469 4.469 12 H 0.046 0.954 13 C 0.029 3.971 14 N -0.908 5.908 15 Si 0.939 3.061 16 H -0.276 1.276 17 H -0.291 1.291 18 H -0.276 1.276 19 C -0.175 4.175 20 C -0.190 4.190 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.050 0.950 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.334 0.666 29 H 0.005 0.995 30 H 0.036 0.964 31 H 0.252 0.748 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 1.077 6.877 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.173 4.173 6 C -0.052 4.052 7 H 0.076 0.924 8 N -0.289 5.289 9 C -0.004 4.004 10 C 0.023 3.977 11 C -0.507 4.507 12 H 0.064 0.936 13 C -0.170 4.170 14 N -0.547 5.547 15 Si 0.766 3.234 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.202 1.202 19 C -0.213 4.213 20 C -0.227 4.227 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.069 0.931 24 H 0.111 0.889 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.152 0.848 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.849 0.832 7.090 11.369 hybrid contribution 0.411 0.143 -0.467 0.638 sum -8.438 0.975 6.622 10.771 Atomic orbital electron populations 1.21706 0.93498 1.02274 1.01863 1.22704 0.96192 0.98359 0.95323 0.89516 1.22796 0.97516 0.99397 0.96115 1.22936 0.97662 0.99903 0.96803 1.23182 0.95264 0.96584 0.90215 0.92439 1.60292 1.55587 1.07980 1.05051 1.21167 0.94133 0.94639 0.90471 1.19060 0.95399 0.97418 0.85869 1.20301 0.93021 0.92246 1.45146 0.93554 1.25447 1.00680 0.95693 0.95149 1.70113 1.23155 1.10976 1.50431 0.85933 0.79817 0.79255 0.78393 1.20127 1.21726 1.20184 1.22490 0.99600 0.94765 1.04458 1.23054 0.95504 0.97812 1.06316 0.92154 0.91184 0.93089 0.88911 0.90569 0.93198 0.92005 0.84774 0.97680 0.94536 0.93939 0.91152 0.92377 0.90427 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.71 71.98 0.70 -2.17 16 2 C -0.11 -2.84 3.96 -10.27 -0.04 -2.88 16 3 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 4 C -0.12 -3.02 7.63 31.12 0.24 -2.78 16 5 C -0.13 -4.58 7.88 31.12 0.25 -4.33 16 6 C 0.06 1.96 3.66 45.45 0.17 2.13 16 7 H 0.06 1.93 7.86 -2.39 -0.02 1.91 16 8 N -0.66 -27.26 5.82 -488.83 -2.84 -30.10 16 9 C 0.13 5.72 5.62 86.30 0.49 6.21 16 10 C 0.02 1.14 1.65 -52.90 -0.09 1.05 16 11 C -0.47 -25.70 8.11 25.60 0.21 -25.50 16 12 H 0.05 2.56 7.83 -2.91 -0.02 2.53 16 13 C 0.03 1.65 5.41 84.65 0.46 2.11 16 14 N -0.91 -53.29 13.20 21.45 0.28 -53.01 16 15 Si 0.94 45.04 29.55 68.60 2.03 47.07 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 C -0.17 -8.30 9.79 30.60 0.30 -8.00 16 20 C -0.19 -8.04 9.88 30.62 0.30 -7.74 16 21 H 0.06 1.17 7.94 -2.39 -0.02 1.15 16 22 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.09 1.98 7.96 -2.39 -0.02 1.96 16 25 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.33 12.99 8.63 -89.70 -0.77 12.21 16 29 H 0.01 0.22 7.94 -2.38 -0.02 0.20 16 30 H 0.04 1.90 8.13 -2.38 -0.02 1.88 16 31 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.09 3.25 8.08 -2.39 -0.02 3.23 16 Total: -1.00 -59.84 289.17 2.70 -57.14 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.26 Total: 20.80 kcal Atomic # 6 Polarization: -44.86 SS G_CDS: 2.97 Total: -41.89 kcal Atomic # 7 Polarization: -80.56 SS G_CDS: -2.56 Total: -83.12 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -59.84 2.70 -57.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308242262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.192 kcal (2) G-P(sol) polarization free energy of solvation -59.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds