Wall clock time and date at job start Thu Apr 9 2020 11:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47415 * 2 1 4 4 C 1.50702 * 109.47109 * 120.00769 * 2 1 3 5 5 C 1.33394 * 125.20017 * 259.71809 * 4 2 1 6 6 C 1.38419 * 114.91945 * 179.85808 * 5 4 2 7 7 C 1.33389 * 114.92245 * 0.43213 * 6 5 4 8 8 S 1.75875 * 125.20546 * 80.02103 * 4 2 1 9 9 N 1.46507 * 109.47282 * 240.00370 * 2 1 3 10 10 C 1.46502 * 119.99600 * 300.00102 * 9 2 1 11 11 C 1.36930 * 120.00074 * 120.00106 * 9 2 1 12 12 H 1.07997 * 119.99916 * 337.74448 * 11 9 2 13 13 C 1.38808 * 119.99993 * 157.47204 * 11 9 2 14 14 N 1.31622 * 119.99957 * 347.11849 * 13 11 9 15 15 Si 1.86804 * 120.00091 * 167.11856 * 13 11 9 16 16 H 1.48501 * 109.47127 * 90.00107 * 15 13 11 17 17 H 1.48504 * 109.47001 * 210.00094 * 15 13 11 18 18 H 1.48496 * 109.47034 * 329.99676 * 15 13 11 19 19 H 1.08999 * 109.47057 * 299.99761 * 1 2 3 20 20 H 1.09000 * 109.46876 * 59.99626 * 1 2 3 21 21 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 22 22 H 1.08005 * 122.53795 * 0.02562 * 5 4 2 23 23 H 1.08003 * 122.53811 * 180.20234 * 6 5 4 24 24 H 1.07998 * 125.20313 * 179.75728 * 7 6 5 25 25 H 1.08994 * 109.47318 * 265.33722 * 10 9 2 26 26 H 1.08993 * 109.47255 * 25.34356 * 10 9 2 27 27 H 1.09000 * 109.46502 * 145.34146 * 10 9 2 28 28 H 0.97004 * 119.99823 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 2.4720 -0.1120 2.3384 6 6 2.8816 -0.9720 3.3427 7 6 2.7829 -2.2690 3.0469 8 16 2.1355 -2.4558 1.4223 9 7 2.0183 -0.6906 -1.1963 10 6 1.6644 -2.0931 -1.4281 11 6 2.8056 -0.0250 -2.0975 12 1 2.7810 1.0537 -2.1429 13 6 3.6395 -0.7366 -2.9490 14 7 3.8691 -2.0140 -2.7295 15 14 4.4360 0.1185 -4.4064 16 1 5.7476 0.6800 -3.9946 17 1 4.6393 -0.8606 -5.5043 18 1 3.5540 1.2158 -4.8789 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 2.5035 0.9624 2.4448 23 1 3.2562 -0.6196 4.2923 24 1 3.0585 -3.0802 3.7044 25 1 2.4566 -2.7360 -1.0446 26 1 0.7305 -2.3218 -0.9148 27 1 1.5427 -2.2650 -2.4976 28 1 4.4516 -2.5113 -3.3248 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042227143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:34 Heat of formation + Delta-G solvation = 55.121953 kcal Electronic energy + Delta-G solvation = -12124.487764 eV Core-core repulsion = 10075.077699 eV Total energy + Delta-G solvation = -2049.410065 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.52156 -35.79219 -32.32844 -29.49110 -27.71618 -26.09615 -23.98657 -22.68897 -20.09517 -18.55787 -16.76265 -16.23195 -14.90271 -14.77915 -13.78767 -13.47142 -12.94288 -12.52881 -12.15038 -11.95403 -11.79524 -11.42443 -11.12882 -10.84577 -10.75291 -10.55919 -10.38127 -9.94752 -9.87645 -9.71403 -8.57435 -7.92846 -7.69771 -6.82124 -5.74387 -3.20409 1.73212 2.42579 2.82838 3.36857 3.40245 3.44201 3.46329 4.47957 5.36447 5.46315 5.56561 5.59635 5.98236 6.08330 6.13740 6.18261 6.38226 6.61772 6.66092 6.78530 6.86222 7.01630 7.16828 7.34643 7.71098 7.78917 8.36027 9.19492 9.81577 10.30664 11.29681 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.041578 B = 0.010362 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.272080 B = 2701.531749 C = 2822.181439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.228 3.772 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.177 4.177 6 C -0.132 4.132 7 C -0.265 4.265 8 S 0.135 5.865 9 N -0.588 5.588 10 C 0.150 3.850 11 C -0.258 4.258 12 H 0.070 0.930 13 C 0.005 3.995 14 N -0.902 5.902 15 Si 0.906 3.094 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.279 1.279 19 H 0.047 0.953 20 H 0.058 0.942 21 H 0.051 0.949 22 H 0.128 0.872 23 H 0.124 0.876 24 H 0.149 0.851 25 H 0.044 0.956 26 H 0.003 0.997 27 H 0.049 0.951 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 0.733 7.994 9.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.118 3.882 3 H 0.098 0.902 4 C -0.267 4.267 5 C -0.207 4.207 6 C -0.164 4.164 7 C -0.401 4.401 8 S 0.399 5.601 9 N -0.309 5.309 10 C 0.005 3.995 11 C -0.388 4.388 12 H 0.088 0.912 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.736 3.264 16 H -0.214 1.214 17 H -0.216 1.216 18 H -0.205 1.205 19 H 0.066 0.934 20 H 0.077 0.923 21 H 0.070 0.930 22 H 0.146 0.854 23 H 0.141 0.859 24 H 0.167 0.833 25 H 0.062 0.938 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.721 -0.656 6.955 8.432 hybrid contribution 1.135 1.504 0.261 1.902 sum -3.586 0.849 7.216 8.103 Atomic orbital electron populations 1.22271 0.97220 1.01459 1.00660 1.19098 0.92139 0.94958 0.82017 0.90203 1.26050 1.04559 0.96082 0.99973 1.19933 1.06489 1.00451 0.93839 1.19969 1.03664 0.92572 1.00152 1.25769 1.12294 1.00186 1.01809 1.84609 1.62003 1.05815 1.07644 1.44113 1.57580 1.09878 1.19340 1.20912 0.94603 0.84692 0.99282 1.19238 1.16958 0.91196 1.11402 0.91180 1.25053 0.97553 0.96265 1.00566 1.70078 1.38966 1.07730 1.37856 0.86241 0.79335 0.78568 0.82284 1.21409 1.21550 1.20472 0.93395 0.92273 0.93044 0.85374 0.85850 0.83340 0.93805 0.97868 0.93231 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.16 37.15 0.34 -2.45 15 2 C 0.23 4.81 3.15 -69.08 -0.22 4.59 15 3 H 0.08 1.67 7.84 -51.93 -0.41 1.26 15 4 C -0.15 -2.94 5.45 -36.00 -0.20 -3.13 15 5 C -0.18 -3.22 10.04 -41.21 -0.41 -3.63 15 6 C -0.13 -2.21 10.18 -41.21 -0.42 -2.62 15 7 C -0.27 -4.49 11.23 29.04 0.33 -4.16 15 8 S 0.14 2.62 19.61 -107.50 -2.11 0.51 15 9 N -0.59 -14.75 2.80 -174.82 -0.49 -15.24 15 10 C 0.15 3.69 6.91 59.85 0.41 4.11 15 11 C -0.26 -7.09 9.59 -15.06 -0.14 -7.23 15 12 H 0.07 1.87 7.82 -52.49 -0.41 1.46 15 13 C 0.00 0.13 5.10 -17.43 -0.09 0.04 15 14 N -0.90 -26.22 10.68 55.49 0.59 -25.62 15 15 Si 0.91 21.79 29.57 -169.99 -5.03 16.77 15 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 19 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.05 0.92 6.66 -51.93 -0.35 0.57 15 22 H 0.13 2.07 8.06 -52.48 -0.42 1.65 15 23 H 0.12 1.71 8.06 -52.48 -0.42 1.28 15 24 H 0.15 2.10 8.06 -52.49 -0.42 1.68 15 25 H 0.04 1.16 6.07 -51.93 -0.32 0.84 15 26 H 0.00 0.06 6.01 -51.93 -0.31 -0.25 15 27 H 0.05 1.31 7.27 -51.93 -0.38 0.93 15 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 LS Contribution 245.24 15.07 3.70 3.70 Total: -1.00 -29.36 245.24 -7.15 -36.52 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -3.42 Total: -2.12 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.40 Total: -14.50 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.10 Total: -40.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.11 Total: 0.51 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.36 -7.15 -36.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.638 kcal (2) G-P(sol) polarization free energy of solvation -29.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds