Wall clock time and date at job start Thu Apr 9 2020 11:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47415 * 2 1 4 4 C 1.50702 * 109.47109 * 120.00769 * 2 1 3 5 5 C 1.33394 * 125.20017 * 259.71809 * 4 2 1 6 6 C 1.38419 * 114.91945 * 179.85808 * 5 4 2 7 7 C 1.33389 * 114.92245 * 0.43213 * 6 5 4 8 8 S 1.75875 * 125.20546 * 80.02103 * 4 2 1 9 9 N 1.46507 * 109.47282 * 240.00370 * 2 1 3 10 10 C 1.46502 * 119.99600 * 300.00102 * 9 2 1 11 11 C 1.36930 * 120.00074 * 120.00106 * 9 2 1 12 12 H 1.07997 * 119.99916 * 337.74448 * 11 9 2 13 13 C 1.38808 * 119.99993 * 157.47204 * 11 9 2 14 14 N 1.31622 * 119.99957 * 347.11849 * 13 11 9 15 15 Si 1.86804 * 120.00091 * 167.11856 * 13 11 9 16 16 H 1.48501 * 109.47127 * 90.00107 * 15 13 11 17 17 H 1.48504 * 109.47001 * 210.00094 * 15 13 11 18 18 H 1.48496 * 109.47034 * 329.99676 * 15 13 11 19 19 H 1.08999 * 109.47057 * 299.99761 * 1 2 3 20 20 H 1.09000 * 109.46876 * 59.99626 * 1 2 3 21 21 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 22 22 H 1.08005 * 122.53795 * 0.02562 * 5 4 2 23 23 H 1.08003 * 122.53811 * 180.20234 * 6 5 4 24 24 H 1.07998 * 125.20313 * 179.75728 * 7 6 5 25 25 H 1.08994 * 109.47318 * 265.33722 * 10 9 2 26 26 H 1.08993 * 109.47255 * 25.34356 * 10 9 2 27 27 H 1.09000 * 109.46502 * 145.34146 * 10 9 2 28 28 H 0.97004 * 119.99823 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 2.4720 -0.1120 2.3384 6 6 2.8816 -0.9720 3.3427 7 6 2.7829 -2.2690 3.0469 8 16 2.1355 -2.4558 1.4223 9 7 2.0183 -0.6906 -1.1963 10 6 1.6644 -2.0931 -1.4281 11 6 2.8056 -0.0250 -2.0975 12 1 2.7810 1.0537 -2.1429 13 6 3.6395 -0.7366 -2.9490 14 7 3.8691 -2.0140 -2.7295 15 14 4.4360 0.1185 -4.4064 16 1 5.7476 0.6800 -3.9946 17 1 4.6393 -0.8606 -5.5043 18 1 3.5540 1.2158 -4.8789 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 2.5035 0.9624 2.4448 23 1 3.2562 -0.6196 4.2923 24 1 3.0585 -3.0802 3.7044 25 1 2.4566 -2.7360 -1.0446 26 1 0.7305 -2.3218 -0.9148 27 1 1.5427 -2.2650 -2.4976 28 1 4.4516 -2.5113 -3.3248 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042227143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:34 Heat of formation + Delta-G solvation = 38.485354 kcal Electronic energy + Delta-G solvation = -12125.209181 eV Core-core repulsion = 10075.077699 eV Total energy + Delta-G solvation = -2050.131483 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 211.073 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.04611 -37.48297 -34.20189 -31.31488 -29.15273 -28.10093 -25.62977 -24.34414 -21.75930 -19.99806 -18.71121 -17.84343 -16.72258 -16.28751 -15.60570 -15.18236 -14.60162 -14.23441 -13.64053 -13.49747 -13.34515 -12.94647 -12.80326 -12.63938 -12.57805 -12.34964 -12.21133 -11.81646 -11.66887 -11.25506 -10.62785 -9.36373 -9.18109 -8.81964 -7.81780 -5.30867 0.31686 0.98144 1.41225 1.47164 1.48024 1.57552 2.02461 2.51370 3.31824 3.67894 4.03364 4.34114 4.48679 4.57430 4.73666 4.79419 4.82740 5.01645 5.13801 5.24605 5.34920 5.42715 5.60408 5.63937 5.74167 5.80036 6.32206 7.13968 7.84115 8.29056 9.20550 Molecular weight = 211.07amu Principal moments of inertia in cm(-1) A = 0.041578 B = 0.010362 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.272080 B = 2701.531749 C = 2822.181439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.223 3.777 3 H 0.077 0.923 4 C -0.176 4.176 5 C -0.168 4.168 6 C -0.136 4.136 7 C -0.250 4.250 8 S 0.087 5.913 9 N -0.605 5.605 10 C 0.170 3.830 11 C -0.268 4.268 12 H 0.073 0.927 13 C -0.050 4.050 14 N -0.934 5.934 15 Si 0.969 3.031 16 H -0.287 1.287 17 H -0.294 1.294 18 H -0.269 1.269 19 H 0.075 0.925 20 H 0.056 0.944 21 H 0.046 0.954 22 H 0.149 0.851 23 H 0.160 0.840 24 H 0.179 0.821 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.018 0.982 28 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.562 1.771 9.591 10.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.115 3.885 3 H 0.095 0.905 4 C -0.296 4.296 5 C -0.198 4.198 6 C -0.167 4.167 7 C -0.385 4.385 8 S 0.351 5.649 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.398 4.398 12 H 0.091 0.909 13 C -0.245 4.245 14 N -0.580 5.580 15 Si 0.798 3.202 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.194 1.194 19 H 0.094 0.906 20 H 0.075 0.925 21 H 0.065 0.935 22 H 0.166 0.834 23 H 0.178 0.822 24 H 0.196 0.804 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.037 0.963 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.822 0.409 8.579 9.850 hybrid contribution 1.123 1.214 -0.060 1.655 sum -3.699 1.623 8.520 9.429 Atomic orbital electron populations 1.22128 0.94781 1.01533 1.01922 1.19232 0.93776 0.94370 0.81169 0.90521 1.25841 1.06883 0.96247 1.00675 1.20325 1.04307 1.01824 0.93355 1.20339 1.03052 0.92119 1.01163 1.26093 1.10813 1.01458 1.00161 1.84734 1.63389 1.06313 1.10483 1.44257 1.57619 1.09865 1.20917 1.20586 0.94926 0.84732 0.97300 1.19585 1.16599 0.91585 1.12031 0.90879 1.25795 0.98645 0.96960 1.03139 1.70243 1.40012 1.09019 1.38713 0.85246 0.78346 0.77578 0.79073 1.21343 1.22004 1.19386 0.90616 0.92465 0.93506 0.83372 0.82241 0.80368 0.95820 0.95606 0.96331 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.16 71.98 0.66 -4.27 15 2 C 0.22 9.22 3.15 44.24 0.14 9.36 15 3 H 0.08 3.14 7.84 -2.39 -0.02 3.12 15 4 C -0.18 -6.87 5.45 24.59 0.13 -6.73 15 5 C -0.17 -5.61 10.04 21.22 0.21 -5.40 15 6 C -0.14 -4.03 10.18 21.22 0.22 -3.81 15 7 C -0.25 -7.71 11.23 66.72 0.75 -6.96 15 8 S 0.09 3.30 19.61 -56.49 -1.11 2.19 15 9 N -0.60 -30.52 2.80 -707.00 -1.98 -32.50 15 10 C 0.17 8.55 6.91 127.77 0.88 9.43 15 11 C -0.27 -14.80 9.59 84.03 0.81 -13.99 15 12 H 0.07 3.88 7.82 -2.91 -0.02 3.86 15 13 C -0.05 -2.81 5.10 84.86 0.43 -2.38 15 14 N -0.93 -55.63 10.68 21.65 0.23 -55.40 15 15 Si 0.97 45.31 29.57 68.60 2.03 47.34 15 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 15 17 H -0.29 -13.79 7.11 99.48 0.71 -13.09 15 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 19 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 20 H 0.06 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.05 1.62 6.66 -2.39 -0.02 1.61 15 22 H 0.15 4.28 8.06 -2.91 -0.02 4.25 15 23 H 0.16 3.59 8.06 -2.91 -0.02 3.56 15 24 H 0.18 4.35 8.06 -2.91 -0.02 4.33 15 25 H 0.02 1.29 6.07 -2.39 -0.01 1.28 15 26 H 0.03 1.14 6.01 -2.39 -0.01 1.13 15 27 H 0.02 1.00 7.27 -2.39 -0.02 0.98 15 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 15 Total: -1.00 -62.79 245.24 4.54 -58.25 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 1.14 Total: 4.87 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 4.23 Total: -24.76 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -1.75 Total: -87.90 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.11 Total: 2.19 kcal Total: -62.79 4.54 -58.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042227143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.737 kcal (2) G-P(sol) polarization free energy of solvation -62.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds