Wall clock time and date at job start Thu Apr 9 2020 11:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41380 * 126.80028 * 2 1 4 4 C 1.35448 * 103.98449 * 180.09880 * 3 2 1 5 5 C 1.50701 * 126.77479 * 179.91002 * 4 3 2 6 6 N 1.46901 * 109.46921 * 89.70898 * 5 4 3 7 7 C 1.46906 * 110.99793 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47279 * 325.00167 * 7 6 5 9 9 C 1.52995 * 109.46946 * 85.00144 * 7 6 5 10 10 C 1.50701 * 109.46893 * 205.00308 * 7 6 5 11 11 H 1.07996 * 120.00253 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99674 * 180.02562 * 10 7 6 13 13 N 1.31513 * 120.00353 * 359.97438 * 12 10 7 14 14 Si 1.86796 * 119.99967 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.47200 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47268 * 119.99842 * 14 12 10 17 17 H 1.48506 * 109.47301 * 239.99804 * 14 12 10 18 18 O 1.34037 * 106.44709 * 359.64769 * 4 3 2 19 19 N 1.20925 * 111.56480 * 0.24221 * 18 4 3 20 20 H 1.09008 * 109.46840 * 270.28636 * 1 2 3 21 21 H 1.08997 * 109.47401 * 30.28320 * 1 2 3 22 22 H 1.08993 * 109.47238 * 150.29200 * 1 2 3 23 23 H 1.08011 * 128.00576 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47060 * 209.71079 * 5 4 3 25 25 H 1.09001 * 109.47380 * 329.71167 * 5 4 3 26 26 H 1.00898 * 110.99877 * 56.04636 * 6 5 4 27 27 H 1.09003 * 109.47112 * 59.99921 * 9 7 6 28 28 H 1.09001 * 109.47056 * 179.97438 * 9 7 6 29 29 H 1.09000 * 109.47395 * 299.99746 * 9 7 6 30 30 H 0.97002 * 120.00598 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6068 -0.0023 5 6 4.9021 1.3697 -0.0052 6 7 5.3236 1.6241 1.3789 7 6 6.5904 2.3671 1.4153 8 1 7.2218 2.0497 0.5854 9 6 6.3062 3.8657 1.2957 10 6 7.2968 2.0921 2.7177 11 1 6.8497 1.4312 3.4454 12 6 8.5139 2.6843 2.9802 13 7 9.0586 3.4888 2.0938 14 14 9.3893 2.3440 4.5949 15 1 8.5726 1.4126 5.4140 16 1 10.7138 1.7311 4.3204 17 1 9.5771 3.6181 5.3343 18 8 3.4538 -0.7252 0.0045 19 7 2.2868 -1.0422 0.0056 20 1 -0.3633 0.0051 1.0277 21 1 -0.3634 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5093 23 1 2.0708 2.1744 0.0004 24 1 5.6663 0.7836 -0.5158 25 1 4.7653 2.3187 -0.5236 26 1 5.3949 0.7627 1.8993 27 1 5.6748 4.1832 2.1255 28 1 7.2461 4.4170 1.3231 29 1 5.7953 4.0646 0.3536 30 1 9.9148 3.9057 2.2786 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044991355.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:45 Heat of formation + Delta-G solvation = 33.973562 kcal Electronic energy + Delta-G solvation = -13458.598553 eV Core-core repulsion = 11063.237215 eV Total energy + Delta-G solvation = -2395.361337 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.83802 -37.97102 -35.69328 -34.97869 -32.98323 -30.18904 -29.51608 -27.42833 -26.09831 -23.97240 -21.83327 -21.01543 -18.81434 -18.54739 -17.88366 -16.93491 -16.11611 -15.63249 -15.39049 -14.57772 -14.34905 -14.14366 -13.91320 -13.60794 -13.48524 -13.07877 -12.80312 -12.71436 -12.26744 -12.20377 -12.04321 -11.92255 -10.93248 -10.90918 -10.58869 -10.37149 -9.18618 -8.13862 -6.27375 0.47170 1.31753 1.42230 1.44789 1.55880 2.12743 2.42696 3.15510 3.33357 3.50382 3.71606 4.09700 4.29844 4.41641 4.62352 4.69129 4.73303 4.85912 4.95923 4.97679 5.10565 5.20354 5.30616 5.46126 5.65605 5.84949 6.22866 6.36337 6.65993 6.92258 7.28721 7.42789 8.91783 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058626 B = 0.006166 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.488339 B = 4539.630250 C = 4726.263434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.014 3.986 3 C -0.218 4.218 4 C -0.021 4.021 5 C 0.140 3.860 6 N -0.681 5.681 7 C 0.215 3.785 8 H -0.019 1.019 9 C -0.115 4.115 10 C -0.539 4.539 11 H 0.057 0.943 12 C 0.017 3.983 13 N -0.915 5.915 14 Si 0.960 3.040 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.279 1.279 18 O 0.068 5.932 19 N -0.400 5.400 20 H 0.090 0.910 21 H 0.105 0.895 22 H 0.079 0.921 23 H 0.193 0.807 24 H 0.045 0.955 25 H 0.112 0.888 26 H 0.334 0.666 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.031 0.969 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -2.821 -4.487 13.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C -0.240 4.240 4 C -0.084 4.084 5 C 0.010 3.990 6 N -0.312 5.312 7 C 0.107 3.893 8 H -0.001 1.001 9 C -0.174 4.174 10 C -0.578 4.578 11 H 0.075 0.925 12 C -0.183 4.183 13 N -0.554 5.554 14 Si 0.786 3.214 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.205 1.205 18 O 0.008 5.992 19 N -0.111 5.111 20 H 0.109 0.891 21 H 0.124 0.876 22 H 0.098 0.902 23 H 0.210 0.790 24 H 0.063 0.937 25 H 0.130 0.870 26 H 0.151 0.849 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.085 -3.462 -4.453 14.249 hybrid contribution 1.398 0.032 0.508 1.488 sum -11.687 -3.430 -3.945 12.803 Atomic orbital electron populations 1.20331 0.83189 1.04993 1.04448 1.24292 1.00716 0.88385 1.01072 1.22742 0.90361 1.02122 1.08771 1.24663 0.99136 0.82961 1.01684 1.20420 0.88309 0.97735 0.92488 1.60776 1.34501 1.25520 1.10451 1.18993 0.83893 0.91614 0.94800 1.00136 1.21565 1.00202 0.97996 0.97623 1.21581 1.04448 1.28403 1.03337 0.92523 1.25658 0.97826 0.94710 1.00081 1.70005 1.18218 1.31083 1.36076 0.85471 0.78207 0.78000 0.79703 1.19407 1.20617 1.20502 1.84761 1.21978 1.23815 1.68667 1.73803 0.89612 1.25573 1.22102 0.89118 0.87644 0.90233 0.78979 0.93670 0.87035 0.84936 0.95247 0.92343 0.95001 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.47 71.24 0.75 -0.47 16 2 C 0.01 0.38 7.33 43.58 0.32 0.70 16 3 C -0.22 -5.88 11.06 22.40 0.25 -5.63 16 4 C -0.02 -0.66 7.00 25.04 0.18 -0.48 16 5 C 0.14 4.72 6.05 85.56 0.52 5.24 16 6 N -0.68 -27.96 6.29 -499.44 -3.14 -31.10 16 7 C 0.21 10.53 2.60 44.17 0.11 10.64 16 8 H -0.02 -1.01 7.80 -2.39 -0.02 -1.03 16 9 C -0.12 -5.46 9.19 71.98 0.66 -4.79 16 10 C -0.54 -29.11 8.59 25.60 0.22 -28.89 16 11 H 0.06 3.04 7.62 -2.91 -0.02 3.02 16 12 C 0.02 0.91 5.30 84.66 0.45 1.36 16 13 N -0.91 -51.36 11.32 21.45 0.24 -51.12 16 14 Si 0.96 42.95 29.54 68.60 2.03 44.98 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 O 0.07 2.34 11.20 71.66 0.80 3.14 16 19 N -0.40 -13.03 12.07 -49.57 -0.60 -13.63 16 20 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 21 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.19 4.14 8.06 -2.90 -0.02 4.12 16 24 H 0.05 1.53 8.05 -2.39 -0.02 1.51 16 25 H 0.11 3.44 7.44 -2.39 -0.02 3.42 16 26 H 0.33 13.96 8.21 -89.70 -0.74 13.22 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 29 H 0.03 1.29 7.45 -2.39 -0.02 1.27 16 30 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -60.52 260.91 3.18 -57.34 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.40 Total: 12.71 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 3.45 Total: -22.32 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -3.50 Total: -95.85 kcal Atomic # 8 Polarization: 2.34 SS G_CDS: 0.80 Total: 3.14 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -60.52 3.18 -57.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044991355.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.314 kcal (2) G-P(sol) polarization free energy of solvation -60.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds