Wall clock time and date at job start Thu Apr 9 2020 11:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36878 * 120.00335 * 2 1 4 4 H 1.07997 * 120.00547 * 222.69429 * 3 2 1 5 5 C 1.39009 * 119.99720 * 42.69613 * 3 2 1 6 6 N 1.31401 * 120.00126 * 8.27434 * 5 3 2 7 7 Si 1.86798 * 120.00400 * 188.28018 * 5 3 2 8 8 H 1.48495 * 109.47548 * 89.99551 * 7 5 3 9 9 H 1.48499 * 109.47475 * 210.00353 * 7 5 3 10 10 H 1.48503 * 109.46725 * 329.99922 * 7 5 3 11 11 C 1.34780 * 120.00167 * 180.02562 * 2 1 3 12 12 O 1.21751 * 119.99804 * 5.78515 * 11 2 1 13 13 C 1.46455 * 120.00256 * 185.79384 * 11 2 1 14 14 C 1.36765 * 125.46081 * 186.61960 * 13 11 2 15 15 C 1.37452 * 113.27603 * 179.97438 * 14 13 11 16 16 C 1.33849 * 115.10617 * 0.02562 * 15 14 13 17 17 S 1.70613 * 110.97037 * 359.97438 * 16 15 14 18 18 H 1.08997 * 109.47055 * 266.27259 * 1 2 3 19 19 H 1.08997 * 109.46967 * 26.27799 * 1 2 3 20 20 H 1.09006 * 109.47292 * 146.27899 * 1 2 3 21 21 H 0.96997 * 120.00269 * 180.02562 * 6 5 3 22 22 H 1.07997 * 123.36634 * 0.23960 * 14 13 11 23 23 H 1.07998 * 122.44446 * 180.02562 * 15 14 13 24 24 H 1.07994 * 124.51346 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.0148 1.3093 -0.6342 5 6 1.7307 2.2297 0.8164 6 7 0.7830 2.0301 1.7044 7 14 2.5152 3.9169 0.6510 8 1 1.7581 4.7196 -0.3427 9 1 2.4899 4.6056 1.9664 10 1 3.9214 3.7666 0.1979 11 6 2.1389 -1.1672 -0.0005 12 8 1.5348 -2.2189 -0.1073 13 6 3.5978 -1.1705 0.1275 14 6 4.4019 -2.2709 0.0128 15 6 5.7368 -1.9877 0.1776 16 6 6.0189 -0.7019 0.4195 17 16 4.5965 0.2395 0.4530 18 1 -0.3633 -0.0668 1.0255 19 1 -0.3633 0.9214 -0.4550 20 1 -0.3634 -0.8548 -0.5705 21 1 0.4905 2.7588 2.2738 22 1 4.0260 -3.2625 -0.1915 23 1 6.5021 -2.7473 0.1164 24 1 7.0145 -0.3121 0.5722 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049166.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:49 Heat of formation + Delta-G solvation = -3.418735 kcal Electronic energy + Delta-G solvation = -11871.643039 eV Core-core repulsion = 9683.861365 eV Total energy + Delta-G solvation = -2187.781675 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.54780 -36.58180 -34.74747 -31.71701 -29.18502 -26.42281 -25.12374 -23.21550 -20.06116 -18.67645 -17.82399 -16.34810 -15.09175 -14.82675 -14.39414 -14.02333 -13.85072 -12.59605 -12.33146 -11.95891 -11.65226 -11.54095 -11.38298 -11.27419 -11.04227 -10.83240 -10.43549 -9.83740 -9.16951 -8.69353 -8.00309 -7.70254 -7.52141 -6.60947 -4.39007 1.49289 2.56972 2.94732 3.09250 3.09899 3.11268 3.26479 3.90377 4.33437 4.76119 4.88044 5.67689 5.99370 6.20730 6.26883 6.62934 6.77591 6.79747 7.06503 7.11346 7.16780 7.18924 7.72754 8.13037 8.81342 9.32417 9.76391 10.39620 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.031184 B = 0.015811 C = 0.010948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.691413 B = 1770.540971 C = 2556.828435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.438 5.438 3 C -0.348 4.348 4 H 0.102 0.898 5 C 0.061 3.939 6 N -0.843 5.843 7 Si 0.910 3.090 8 H -0.271 1.271 9 H -0.277 1.277 10 H -0.257 1.257 11 C 0.533 3.467 12 O -0.599 6.599 13 C -0.218 4.218 14 C -0.108 4.108 15 C -0.154 4.154 16 C -0.326 4.326 17 S 0.284 5.716 18 H 0.055 0.945 19 H 0.057 0.943 20 H 0.042 0.958 21 H 0.276 0.724 22 H 0.137 0.863 23 H 0.120 0.880 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.882 1.491 -1.382 6.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.156 5.156 3 C -0.481 4.481 4 H 0.118 0.882 5 C -0.151 4.151 6 N -0.475 5.475 7 Si 0.735 3.265 8 H -0.196 1.196 9 H -0.202 1.202 10 H -0.181 1.181 11 C 0.323 3.677 12 O -0.487 6.487 13 C -0.339 4.339 14 C -0.141 4.141 15 C -0.186 4.186 16 C -0.463 4.463 17 S 0.557 5.443 18 H 0.074 0.926 19 H 0.076 0.924 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.155 0.845 23 H 0.138 0.862 24 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.222 2.629 -1.018 5.935 hybrid contribution 0.783 -0.659 -0.125 1.031 sum 6.006 1.971 -1.144 6.424 Atomic orbital electron populations 1.21329 0.80862 0.99509 1.01122 1.43219 1.05468 1.04250 1.62632 1.19466 1.13247 0.90566 1.24859 0.88162 1.25623 0.95813 1.00476 0.93171 1.69904 1.26571 1.33398 1.17673 0.86152 0.80573 0.81369 0.78450 1.19585 1.20160 1.18086 1.17262 0.84980 0.84123 0.81365 1.90654 1.69209 1.31690 1.57164 1.24739 0.98196 0.97614 1.13333 1.20520 0.92123 0.98871 1.02572 1.19721 0.96007 0.96190 1.06651 1.26370 1.07707 1.01545 1.10674 1.84424 0.90460 1.07239 1.62175 0.92604 0.92368 0.93977 0.91312 0.84535 0.86243 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.77 8.88 59.84 0.53 3.31 14 2 N -0.44 -11.32 2.90 -123.77 -0.36 -11.68 14 3 C -0.35 -8.56 6.70 -15.01 -0.10 -8.66 14 4 H 0.10 2.37 5.66 -36.79 -0.21 2.16 14 5 C 0.06 1.45 5.21 -17.45 -0.09 1.36 14 6 N -0.84 -21.26 11.86 55.50 0.66 -20.60 14 7 Si 0.91 18.14 29.56 -169.99 -5.03 13.12 14 8 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 9 H -0.28 -5.49 7.11 56.52 0.40 -5.09 14 10 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 11 C 0.53 14.01 7.59 -12.95 -0.10 13.91 14 12 O -0.60 -16.89 16.46 5.14 0.08 -16.80 14 13 C -0.22 -5.05 6.27 -36.81 -0.23 -5.28 14 14 C -0.11 -2.23 10.02 -40.40 -0.40 -2.64 14 15 C -0.15 -2.78 10.15 -41.41 -0.42 -3.20 14 16 C -0.33 -5.76 10.92 29.19 0.32 -5.44 14 17 S 0.28 5.74 18.53 -107.50 -1.99 3.75 14 18 H 0.06 1.39 7.64 -51.93 -0.40 1.00 14 19 H 0.06 1.34 7.90 -51.93 -0.41 0.93 14 20 H 0.04 0.97 7.46 -51.93 -0.39 0.58 14 21 H 0.28 6.51 8.31 -40.82 -0.34 6.17 14 22 H 0.14 2.72 8.06 -52.49 -0.42 2.30 14 23 H 0.12 1.80 8.06 -52.49 -0.42 1.37 14 24 H 0.15 2.13 8.06 -52.49 -0.42 1.71 14 LS Contribution 227.51 15.07 3.43 3.43 Total: -1.00 -28.19 227.51 -5.51 -33.70 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -1.81 Total: 1.72 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -0.49 Total: -6.63 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.30 Total: -32.28 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: 0.08 Total: -16.80 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.99 Total: 3.75 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.19 -5.51 -33.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049166.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.277 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds