Wall clock time and date at job start Thu Apr 9 2020 11:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36976 * 120.00035 * 2 1 4 4 H 1.07993 * 120.00421 * 204.18757 * 3 2 1 5 5 C 1.38973 * 119.99751 * 23.90865 * 3 2 1 6 6 N 1.31417 * 120.00218 * 5.19330 * 5 3 2 7 7 Si 1.86800 * 119.99930 * 185.18832 * 5 3 2 8 8 H 1.48507 * 109.46753 * 90.00347 * 7 5 3 9 9 H 1.48490 * 109.47362 * 210.00033 * 7 5 3 10 10 H 1.48496 * 109.47086 * 330.00641 * 7 5 3 11 11 C 1.34770 * 120.00129 * 179.97438 * 2 1 3 12 12 O 1.21671 * 120.00317 * 185.10354 * 11 2 1 13 13 C 1.47110 * 120.00031 * 5.10846 * 11 2 1 14 14 C 1.44434 * 123.47132 * 326.79564 * 13 11 2 15 15 C 1.32766 * 113.08851 * 179.80860 * 14 13 11 16 16 S 1.75497 * 110.59247 * 0.44085 * 15 14 13 17 17 C 1.36097 * 123.46919 * 147.08869 * 13 11 2 18 18 H 1.08994 * 109.46772 * 24.11728 * 1 2 3 19 19 H 1.09002 * 109.46636 * 144.11820 * 1 2 3 20 20 H 1.09002 * 109.46765 * 264.11475 * 1 2 3 21 21 H 0.97000 * 120.00501 * 179.97438 * 6 5 3 22 22 H 1.07999 * 123.45971 * 0.02562 * 14 13 11 23 23 H 1.08006 * 124.70091 * 180.17710 * 15 14 13 24 24 H 1.07994 * 124.60262 * 0.02562 * 17 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1499 1.1862 0.0000 4 1 3.1588 1.2274 -0.3832 5 6 1.5445 2.3381 0.4878 6 7 0.3549 2.2709 1.0423 7 14 2.4216 3.9821 0.3554 8 1 2.0596 4.6342 -0.9287 9 1 2.0126 4.8538 1.4858 10 1 3.8898 3.7650 0.4037 11 6 2.1389 -1.1671 0.0005 12 8 3.3520 -1.1692 0.0943 13 6 1.4078 -2.4387 -0.1123 14 6 0.0897 -2.6513 0.4386 15 6 -0.3779 -3.8733 0.2134 16 16 0.7930 -4.8271 -0.6806 17 6 1.9061 -3.5377 -0.7417 18 1 -0.3633 0.9379 -0.4199 19 1 -0.3633 -0.8327 -0.6024 20 1 -0.3633 -0.1054 1.0223 21 1 -0.0676 3.0748 1.3831 22 1 -0.4607 -1.8929 0.9755 23 1 -1.3431 -4.2321 0.5391 24 1 2.8756 -3.5865 -1.2150 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049168.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:50 Heat of formation + Delta-G solvation = -7.249016 kcal Electronic energy + Delta-G solvation = -11757.987645 eV Core-core repulsion = 9570.039877 eV Total energy + Delta-G solvation = -2187.947768 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 211.041 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.71027 -37.64055 -36.76919 -33.62738 -30.61272 -28.68825 -26.88293 -25.05318 -21.92008 -20.10953 -19.22498 -18.58491 -17.27915 -16.67702 -16.03342 -15.86541 -15.29381 -14.32982 -14.02312 -13.75798 -13.66342 -13.42030 -13.03802 -12.94378 -12.63617 -12.37365 -12.14502 -11.80241 -10.99134 -10.55364 -9.92829 -9.72792 -9.17675 -8.37919 -6.05388 -0.02353 0.75372 1.02902 1.20227 1.39117 1.44454 1.53225 2.25201 2.35814 3.08773 3.13610 3.97051 4.11697 4.46351 4.57376 4.68273 4.98545 5.02032 5.20780 5.36334 5.37945 5.42080 6.05169 6.43714 7.08230 7.36582 7.94927 8.62345 Molecular weight = 211.04amu Principal moments of inertia in cm(-1) A = 0.070040 B = 0.008585 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.673539 B = 3260.578857 C = 3588.995654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.448 5.448 3 C -0.347 4.347 4 H 0.072 0.928 5 C -0.002 4.002 6 N -0.893 5.893 7 Si 0.997 3.003 8 H -0.262 1.262 9 H -0.268 1.268 10 H -0.277 1.277 11 C 0.482 3.518 12 O -0.642 6.642 13 C -0.158 4.158 14 C -0.136 4.136 15 C -0.220 4.220 16 S 0.233 5.767 17 C -0.223 4.223 18 H 0.068 0.932 19 H 0.063 0.937 20 H 0.048 0.952 21 H 0.277 0.723 22 H 0.154 0.846 23 H 0.205 0.795 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 -9.828 -2.560 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.164 5.164 3 C -0.475 4.475 4 H 0.089 0.911 5 C -0.204 4.204 6 N -0.531 5.531 7 Si 0.820 3.180 8 H -0.187 1.187 9 H -0.193 1.193 10 H -0.202 1.202 11 C 0.271 3.729 12 O -0.532 6.532 13 C -0.176 4.176 14 C -0.165 4.165 15 C -0.355 4.355 16 S 0.498 5.502 17 C -0.362 4.362 18 H 0.087 0.913 19 H 0.081 0.919 20 H 0.066 0.934 21 H 0.087 0.913 22 H 0.172 0.828 23 H 0.222 0.778 24 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.103 -11.130 -2.962 13.034 hybrid contribution 0.714 2.595 0.628 2.764 sum -5.389 -8.535 -2.335 10.360 Atomic orbital electron populations 1.21869 0.79138 1.01238 1.00183 1.43741 1.07101 1.04369 1.61219 1.19706 1.00178 0.86018 1.41569 0.91051 1.26206 0.97018 1.02979 0.94200 1.70051 1.15104 1.30933 1.36994 0.84885 0.77988 0.76419 0.78742 1.18687 1.19264 1.20248 1.18275 0.86919 0.84259 0.83431 1.90547 1.16063 1.87975 1.58589 1.20436 0.96894 0.94745 1.05532 1.21663 0.93528 0.98838 1.02468 1.25885 1.05823 0.96939 1.06831 1.82300 1.04400 1.11548 1.51991 1.25581 1.06036 0.98548 1.05996 0.91300 0.91904 0.93383 0.91321 0.82845 0.77785 0.82325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.51 7.15 127.77 0.91 6.42 14 2 N -0.45 -24.91 3.02 -662.96 -2.00 -26.91 14 3 C -0.35 -20.64 9.25 84.07 0.78 -19.86 14 4 H 0.07 4.51 7.47 -2.91 -0.02 4.49 14 5 C 0.00 -0.11 5.20 84.93 0.44 0.33 14 6 N -0.89 -47.52 10.41 21.67 0.23 -47.29 14 7 Si 1.00 43.08 29.56 68.60 2.03 45.10 14 8 H -0.26 -10.67 7.11 99.48 0.71 -9.96 14 9 H -0.27 -10.91 7.11 99.48 0.71 -10.20 14 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 14 11 C 0.48 26.52 7.46 86.57 0.65 27.16 14 12 O -0.64 -40.35 16.69 -4.26 -0.07 -40.42 14 13 C -0.16 -6.72 5.42 -19.87 -0.11 -6.83 14 14 C -0.14 -4.59 8.01 22.67 0.18 -4.41 14 15 C -0.22 -5.39 11.12 66.64 0.74 -4.65 14 16 S 0.23 5.50 23.02 -56.49 -1.30 4.20 14 17 C -0.22 -7.91 10.67 67.32 0.72 -7.20 14 18 H 0.07 3.39 6.40 -2.39 -0.02 3.37 14 19 H 0.06 2.50 5.65 -2.39 -0.01 2.49 14 20 H 0.05 2.21 6.84 -2.39 -0.02 2.20 14 21 H 0.28 13.64 8.31 -92.71 -0.77 12.87 14 22 H 0.15 5.19 5.40 -2.91 -0.02 5.18 14 23 H 0.21 3.24 8.06 -2.91 -0.02 3.22 14 24 H 0.16 5.68 8.06 -2.91 -0.02 5.66 14 Total: -1.00 -71.08 224.47 4.41 -66.67 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.22 Total: 7.69 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 4.31 Total: -9.03 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.77 Total: -74.21 kcal Atomic # 8 Polarization: -40.35 SS G_CDS: -0.07 Total: -40.42 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 5.50 SS G_CDS: -1.30 Total: 4.20 kcal Total: -71.08 4.41 -66.67 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049168.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.418 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds