Wall clock time and date at job start Thu Apr 9 2020 11:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99950 * 2 1 4 4 C 1.53002 * 109.47142 * 122.85921 * 3 2 1 5 5 H 1.09001 * 113.02929 * 41.09262 * 4 3 2 6 6 C 1.53933 * 113.75972 * 172.81315 * 4 3 2 7 7 C 1.53933 * 86.45530 * 138.09153 * 6 4 3 8 8 N 1.47961 * 86.18535 * 336.22882 * 7 6 4 9 9 C 1.46890 * 111.00536 * 137.58274 * 8 7 6 10 10 H 1.08995 * 109.47142 * 54.39617 * 9 8 7 11 11 C 1.53002 * 109.46894 * 294.39343 * 9 8 7 12 12 C 1.53003 * 109.47322 * 174.39951 * 9 8 7 13 13 C 1.50706 * 109.46647 * 295.45101 * 12 9 8 14 14 H 1.08005 * 119.99949 * 5.27989 * 13 12 9 15 15 C 1.37877 * 119.99842 * 185.26845 * 13 12 9 16 16 N 1.31513 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99675 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47263 * 90.00637 * 17 15 13 19 19 H 1.48502 * 109.46881 * 210.00252 * 17 15 13 20 20 H 1.48494 * 109.47320 * 329.99927 * 17 15 13 21 21 H 1.07999 * 120.00319 * 179.97438 * 1 2 3 22 22 H 1.08003 * 120.00100 * 0.02562 * 1 2 3 23 23 H 1.07993 * 119.99918 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47071 * 2.85926 * 3 2 1 25 25 H 1.09000 * 109.47080 * 242.85772 * 3 2 1 26 26 H 1.08996 * 113.73421 * 23.68354 * 6 4 3 27 27 H 1.08997 * 113.73429 * 252.50112 * 6 4 3 28 28 H 1.09004 * 113.75993 * 90.54619 * 7 6 4 29 29 H 1.09000 * 113.76439 * 221.91263 * 7 6 4 30 30 H 1.09000 * 109.47268 * 51.33278 * 11 9 8 31 31 H 1.09007 * 109.46849 * 171.32765 * 11 9 8 32 32 H 1.08998 * 109.47322 * 291.33083 * 11 9 8 33 33 H 1.08994 * 109.47173 * 55.45278 * 12 9 8 34 34 H 1.09001 * 109.46866 * 175.45730 * 12 9 8 35 35 H 0.96997 * 120.00025 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9963 1.3555 1.2117 5 1 3.4980 0.4069 1.4034 6 6 3.9426 2.5696 1.2159 7 6 3.6361 2.6827 2.7201 8 7 2.3807 1.9601 2.4179 9 6 2.1032 0.9383 3.4360 10 1 2.1047 1.3996 4.4235 11 6 3.1813 -0.1457 3.3777 12 6 0.7338 0.3105 3.1684 13 6 -0.3392 1.3555 3.3357 14 1 -0.0669 2.3841 3.5216 15 6 -1.6682 0.9986 3.2512 16 7 -1.9997 -0.2538 3.0251 17 14 -2.9981 2.2941 3.4578 18 1 -3.3282 2.8802 2.1339 19 1 -4.2130 1.6681 4.0387 20 1 -2.5105 3.3637 4.3651 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3563 2.1330 0.0513 25 1 2.6512 1.3854 -0.9145 26 1 3.5774 3.4124 0.6292 27 1 4.9803 2.3177 0.9974 28 1 4.3245 2.1215 3.3521 29 1 3.4822 3.7064 3.0613 30 1 4.1664 0.3192 3.4142 31 1 3.0656 -0.8192 4.2270 32 1 3.0798 -0.7096 2.4504 33 1 0.7055 -0.0797 2.1511 34 1 0.5625 -0.5022 3.8743 35 1 -2.9347 -0.5048 2.9653 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934460010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:08 Heat of formation + Delta-G solvation = 52.518744 kcal Electronic energy + Delta-G solvation = -14662.703421 eV Core-core repulsion = 12469.405269 eV Total energy + Delta-G solvation = -2193.298152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.87636 -33.96617 -33.75595 -31.72631 -28.08666 -27.26608 -26.42345 -23.07582 -22.92584 -20.07029 -19.03573 -18.14493 -16.11994 -15.64845 -14.81617 -14.68507 -14.15484 -13.46231 -13.26393 -12.55875 -12.42284 -12.08717 -11.64977 -11.42458 -11.36399 -11.15749 -10.71473 -10.68161 -10.52294 -10.40346 -10.21121 -9.79635 -9.58918 -9.07475 -8.91000 -8.33463 -7.98295 -7.78772 -5.78707 -3.74037 3.23852 3.42637 3.48803 3.53318 4.55093 4.63660 4.97024 5.24351 5.57110 5.60970 5.72494 5.79715 5.82902 5.88464 5.95416 6.03403 6.06780 6.12957 6.22597 6.27222 6.46333 6.53243 6.58662 6.84668 6.89061 7.08251 7.33511 7.52988 7.68395 7.71650 7.98971 8.14678 8.23243 8.72400 9.30720 9.85396 11.32915 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030296 B = 0.011536 C = 0.010566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.006591 B = 2426.683272 C = 2649.256876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.180 4.180 3 C -0.064 4.064 4 C 0.027 3.973 5 H 0.086 0.914 6 C -0.145 4.145 7 C -0.012 4.012 8 N -0.441 5.441 9 C 0.051 3.949 10 H 0.063 0.937 11 C -0.181 4.181 12 C 0.018 3.982 13 C -0.482 4.482 14 H 0.055 0.945 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.881 3.119 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.277 1.277 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.092 0.908 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.012 0.988 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.412 1.986 -4.456 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.198 4.198 3 C -0.102 4.102 4 C -0.082 4.082 5 H 0.103 0.897 6 C -0.182 4.182 7 C -0.141 4.141 8 N -0.163 5.163 9 C -0.058 4.058 10 H 0.081 0.919 11 C -0.239 4.239 12 C -0.019 4.019 13 C -0.521 4.521 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.542 5.542 17 Si 0.710 3.290 18 H -0.211 1.211 19 H -0.218 1.218 20 H -0.203 1.203 21 H 0.107 0.893 22 H 0.112 0.888 23 H 0.110 0.890 24 H 0.094 0.906 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.618 2.233 -4.496 10.849 hybrid contribution -0.192 0.075 0.555 0.592 sum 9.426 2.308 -3.941 10.474 Atomic orbital electron populations 1.23622 0.95519 1.01599 0.95963 1.22491 0.95995 0.97096 1.04229 1.20472 0.97777 0.96635 0.95300 1.23688 0.94280 0.96710 0.93565 0.89682 1.23400 0.98580 0.99337 0.96925 1.23831 0.93857 1.00446 0.95937 1.68959 1.24938 1.19038 1.03375 1.22303 0.97589 0.90882 0.95031 0.91858 1.22547 0.98915 1.00691 1.01790 1.19399 0.88169 0.95404 0.98916 1.21131 0.90272 0.94713 1.45950 0.92689 1.24912 0.98394 0.94808 0.96403 1.69960 1.16683 1.15988 1.51520 0.86770 0.81894 0.82246 0.78067 1.21052 1.21766 1.20265 0.89339 0.88785 0.89017 0.90630 0.92226 0.89756 0.92236 0.92107 0.90375 0.93967 0.92779 0.92291 0.93641 0.96992 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 12.70 29.02 0.37 -2.28 16 2 C -0.18 -3.30 7.69 -36.02 -0.28 -3.57 16 3 C -0.06 -1.09 5.71 -27.88 -0.16 -1.25 16 4 C 0.03 0.44 2.77 -66.46 -0.18 0.26 16 5 H 0.09 1.40 4.83 -51.93 -0.25 1.15 16 6 C -0.14 -2.04 7.84 -25.80 -0.20 -2.24 16 7 C -0.01 -0.18 7.74 -2.76 -0.02 -0.20 16 8 N -0.44 -8.59 5.67 -222.42 -1.26 -9.85 16 9 C 0.05 1.07 2.32 -67.72 -0.16 0.91 16 10 H 0.06 1.40 8.13 -51.93 -0.42 0.97 16 11 C -0.18 -3.18 7.74 37.16 0.29 -2.89 16 12 C 0.02 0.46 4.58 -27.88 -0.13 0.33 16 13 C -0.48 -13.59 8.83 -34.44 -0.30 -13.90 16 14 H 0.05 1.59 7.73 -52.48 -0.41 1.18 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 17 Si 0.88 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 22 H 0.09 2.06 7.84 -52.48 -0.41 1.64 16 23 H 0.09 1.57 8.06 -52.49 -0.42 1.14 16 24 H 0.08 1.42 7.78 -51.93 -0.40 1.02 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.90 6.23 -51.93 -0.32 0.57 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.64 6.13 -51.93 -0.32 0.33 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 33 H 0.05 1.16 3.83 -51.93 -0.20 0.96 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -29.53 275.30 -7.85 -37.38 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.58 Total: 0.36 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -0.87 Total: -23.39 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.52 Total: -35.76 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.53 -7.85 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934460010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.899 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds