Wall clock time and date at job start Thu Apr 9 2020 11:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99950 * 2 1 4 4 C 1.53002 * 109.47142 * 122.85921 * 3 2 1 5 5 H 1.09001 * 113.02929 * 41.09262 * 4 3 2 6 6 C 1.53933 * 113.75972 * 172.81315 * 4 3 2 7 7 C 1.53933 * 86.45530 * 138.09153 * 6 4 3 8 8 N 1.47961 * 86.18535 * 336.22882 * 7 6 4 9 9 C 1.46890 * 111.00536 * 137.58274 * 8 7 6 10 10 H 1.08995 * 109.47142 * 54.39617 * 9 8 7 11 11 C 1.53002 * 109.46894 * 294.39343 * 9 8 7 12 12 C 1.53003 * 109.47322 * 174.39951 * 9 8 7 13 13 C 1.50706 * 109.46647 * 295.45101 * 12 9 8 14 14 H 1.08005 * 119.99949 * 5.27989 * 13 12 9 15 15 C 1.37877 * 119.99842 * 185.26845 * 13 12 9 16 16 N 1.31513 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99675 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47263 * 90.00637 * 17 15 13 19 19 H 1.48502 * 109.46881 * 210.00252 * 17 15 13 20 20 H 1.48494 * 109.47320 * 329.99927 * 17 15 13 21 21 H 1.07999 * 120.00319 * 179.97438 * 1 2 3 22 22 H 1.08003 * 120.00100 * 0.02562 * 1 2 3 23 23 H 1.07993 * 119.99918 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47071 * 2.85926 * 3 2 1 25 25 H 1.09000 * 109.47080 * 242.85772 * 3 2 1 26 26 H 1.08996 * 113.73421 * 23.68354 * 6 4 3 27 27 H 1.08997 * 113.73429 * 252.50112 * 6 4 3 28 28 H 1.09004 * 113.75993 * 90.54619 * 7 6 4 29 29 H 1.09000 * 113.76439 * 221.91263 * 7 6 4 30 30 H 1.09000 * 109.47268 * 51.33278 * 11 9 8 31 31 H 1.09007 * 109.46849 * 171.32765 * 11 9 8 32 32 H 1.08998 * 109.47322 * 291.33083 * 11 9 8 33 33 H 1.08994 * 109.47173 * 55.45278 * 12 9 8 34 34 H 1.09001 * 109.46866 * 175.45730 * 12 9 8 35 35 H 0.96997 * 120.00025 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9963 1.3555 1.2117 5 1 3.4980 0.4069 1.4034 6 6 3.9426 2.5696 1.2159 7 6 3.6361 2.6827 2.7201 8 7 2.3807 1.9601 2.4179 9 6 2.1032 0.9383 3.4360 10 1 2.1047 1.3996 4.4235 11 6 3.1813 -0.1457 3.3777 12 6 0.7338 0.3105 3.1684 13 6 -0.3392 1.3555 3.3357 14 1 -0.0669 2.3841 3.5216 15 6 -1.6682 0.9986 3.2512 16 7 -1.9997 -0.2538 3.0251 17 14 -2.9981 2.2941 3.4578 18 1 -3.3282 2.8802 2.1339 19 1 -4.2130 1.6681 4.0387 20 1 -2.5105 3.3637 4.3651 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5400 0.9353 -0.0004 23 1 1.8499 -0.9353 -0.0004 24 1 1.3563 2.1330 0.0513 25 1 2.6512 1.3854 -0.9145 26 1 3.5774 3.4124 0.6292 27 1 4.9803 2.3177 0.9974 28 1 4.3245 2.1215 3.3521 29 1 3.4822 3.7064 3.0613 30 1 4.1664 0.3192 3.4142 31 1 3.0656 -0.8192 4.2270 32 1 3.0798 -0.7096 2.4504 33 1 0.7055 -0.0797 2.1511 34 1 0.5625 -0.5022 3.8743 35 1 -2.9347 -0.5048 2.9653 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934460010.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:08 Heat of formation + Delta-G solvation = 33.860797 kcal Electronic energy + Delta-G solvation = -14663.512490 eV Core-core repulsion = 12469.405269 eV Total energy + Delta-G solvation = -2194.107222 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.24733 -35.62134 -35.45293 -33.64381 -29.50410 -29.19716 -27.77972 -24.94227 -24.38745 -21.62980 -20.54440 -19.51991 -18.28017 -17.11482 -16.57265 -16.19655 -15.81646 -14.96581 -14.73590 -14.04536 -13.99870 -13.93310 -13.34727 -13.24948 -12.80991 -12.67845 -12.48326 -12.42445 -12.07560 -12.01560 -11.76258 -11.30475 -11.16406 -11.01792 -10.80503 -10.40596 -9.70126 -9.19967 -8.00566 -6.01405 1.39374 1.40345 1.49877 1.68293 2.50205 3.22105 3.35295 3.75976 3.98915 4.18800 4.31364 4.39436 4.46255 4.54110 4.57499 4.63951 4.81886 4.84812 4.88791 5.01845 5.11247 5.19952 5.20800 5.28910 5.34833 5.53130 5.63214 5.83387 5.91252 5.98281 6.14665 6.18124 6.44789 6.64508 7.10053 7.60895 9.10304 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030296 B = 0.011536 C = 0.010566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.006591 B = 2426.683272 C = 2649.256876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.158 4.158 3 C -0.064 4.064 4 C 0.022 3.978 5 H 0.095 0.905 6 C -0.123 4.123 7 C -0.011 4.011 8 N -0.479 5.479 9 C 0.057 3.943 10 H 0.045 0.955 11 C -0.171 4.171 12 C 0.020 3.980 13 C -0.490 4.490 14 H 0.043 0.957 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.938 3.062 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.050 0.950 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.046 0.954 34 H -0.025 1.025 35 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 2.751 -5.051 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 C -0.102 4.102 4 C -0.087 4.087 5 H 0.113 0.887 6 C -0.161 4.161 7 C -0.140 4.140 8 N -0.202 5.202 9 C -0.052 4.052 10 H 0.063 0.937 11 C -0.229 4.229 12 C -0.017 4.017 13 C -0.529 4.529 14 H 0.061 0.939 15 C -0.189 4.189 16 N -0.569 5.569 17 Si 0.765 3.235 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.128 0.872 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.064 0.936 34 H -0.007 1.007 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.750 3.010 -5.090 13.154 hybrid contribution -0.822 -0.153 0.740 1.117 sum 10.928 2.857 -4.349 12.104 Atomic orbital electron populations 1.23398 0.96467 1.00033 0.99793 1.22802 0.95310 0.98785 1.00687 1.20535 0.97686 0.94557 0.97411 1.23800 0.94564 0.98365 0.91970 0.88747 1.23289 0.99699 0.97781 0.95323 1.23920 0.92201 1.00132 0.97703 1.68897 1.27932 1.19317 1.04019 1.22007 0.96199 0.92192 0.94845 0.93675 1.22413 0.99083 0.99577 1.01838 1.19315 0.90642 0.93961 0.97791 1.21343 0.91340 0.94678 1.45496 0.93871 1.25579 1.00430 0.96552 0.96346 1.70068 1.16963 1.17487 1.52342 0.85862 0.79451 0.80060 0.78084 1.20579 1.21343 1.19881 0.90382 0.91136 0.87176 0.93109 0.88616 0.89426 0.88872 0.90622 0.90337 0.90922 0.92943 0.92111 0.93561 1.00658 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.69 12.70 67.78 0.86 -5.83 16 2 C -0.16 -5.63 7.69 25.65 0.20 -5.44 16 3 C -0.06 -2.04 5.71 29.85 0.17 -1.87 16 4 C 0.02 0.66 2.77 44.96 0.12 0.79 16 5 H 0.10 2.72 4.83 -2.39 -0.01 2.71 16 6 C -0.12 -2.94 7.84 31.24 0.25 -2.70 16 7 C -0.01 -0.31 7.74 86.41 0.67 0.36 16 8 N -0.48 -17.92 5.67 -857.62 -4.86 -22.78 16 9 C 0.06 2.35 2.32 44.92 0.10 2.46 16 10 H 0.04 1.99 8.13 -2.39 -0.02 1.98 16 11 C -0.17 -5.63 7.74 71.98 0.56 -5.07 16 12 C 0.02 1.04 4.58 29.85 0.14 1.17 16 13 C -0.49 -28.26 8.83 25.60 0.23 -28.03 16 14 H 0.04 2.54 7.73 -2.91 -0.02 2.52 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 17 Si 0.94 46.44 29.54 68.60 2.03 48.47 16 18 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.27 -13.29 7.11 99.48 0.71 -12.59 16 21 H 0.08 3.35 8.06 -2.91 -0.02 3.33 16 22 H 0.07 3.24 7.84 -2.91 -0.02 3.22 16 23 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 24 H 0.05 1.88 7.78 -2.39 -0.02 1.86 16 25 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.09 2.06 8.10 -2.39 -0.02 2.04 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.92 6.23 -2.38 -0.01 1.91 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.07 1.95 6.13 -2.39 -0.01 1.93 16 31 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.06 1.97 6.40 -2.39 -0.02 1.96 16 33 H 0.05 2.39 3.83 -2.39 -0.01 2.38 16 34 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 35 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.66 275.30 2.24 -62.42 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.04 Total: 11.04 kcal Atomic # 6 Polarization: -47.03 SS G_CDS: 3.75 Total: -43.27 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -4.58 Total: -78.65 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -64.66 2.24 -62.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934460010.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.276 kcal (2) G-P(sol) polarization free energy of solvation -64.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds