Wall clock time and date at job start Thu Apr 9 2020 11:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50708 * 120.00189 * 2 1 4 4 C 1.52995 * 109.46622 * 125.00349 * 3 2 1 5 5 H 1.09000 * 112.74648 * 65.77343 * 4 3 2 6 6 C 1.53514 * 113.47287 * 196.61831 * 4 3 2 7 7 C 1.53513 * 83.57226 * 140.79371 * 6 4 3 8 8 N 1.47475 * 87.93309 * 333.97518 * 7 6 4 9 9 C 1.46907 * 110.99805 * 138.70260 * 8 7 6 10 10 H 1.09002 * 109.47126 * 205.68949 * 9 8 7 11 11 C 1.53000 * 109.47285 * 325.69383 * 9 8 7 12 12 C 1.53006 * 109.46845 * 85.69331 * 9 8 7 13 13 C 1.50697 * 109.47072 * 64.99962 * 12 9 8 14 14 H 1.08003 * 120.00212 * 0.02562 * 13 12 9 15 15 C 1.37879 * 120.00193 * 179.97438 * 13 12 9 16 16 N 1.31519 * 119.99362 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00313 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47379 * 59.99988 * 17 15 13 19 19 H 1.48498 * 109.47192 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47113 * 299.99896 * 17 15 13 21 21 H 1.08008 * 119.99799 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.00726 * 179.97438 * 1 2 3 23 23 H 1.08002 * 120.00088 * 180.02562 * 2 1 3 24 24 H 1.09002 * 109.46424 * 5.00680 * 3 2 1 25 25 H 1.08997 * 109.46726 * 245.00787 * 3 2 1 26 26 H 1.09002 * 114.17226 * 254.43771 * 6 4 3 27 27 H 1.08997 * 114.16978 * 26.95561 * 6 4 3 28 28 H 1.09004 * 113.47269 * 219.20490 * 7 6 4 29 29 H 1.08998 * 113.47633 * 88.75013 * 7 6 4 30 30 H 1.08989 * 109.47184 * 189.91275 * 11 9 8 31 31 H 1.09005 * 109.46709 * 309.91555 * 11 9 8 32 32 H 1.09003 * 109.46634 * 69.91143 * 11 9 8 33 33 H 1.08998 * 109.47355 * 305.00042 * 12 9 8 34 34 H 1.08998 * 109.46410 * 185.00106 * 12 9 8 35 35 H 0.96994 * 120.00310 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 1 3.8268 0.5889 1.0938 6 6 3.5504 2.7397 1.5165 7 6 3.3989 2.2621 2.9676 8 7 2.3637 1.3244 2.4946 9 6 2.5011 0.0156 3.1475 10 1 2.0767 -0.7568 2.5061 11 6 3.9824 -0.2803 3.3904 12 6 1.7584 0.0325 4.4852 13 6 0.2815 0.2015 4.2376 14 1 -0.0903 0.2878 3.2273 15 6 -0.5952 0.2450 5.3008 16 7 -0.1425 0.1385 6.5311 17 14 -2.4259 0.4538 4.9940 18 1 -2.9212 -0.6756 4.1666 19 1 -3.1468 0.4691 6.2921 20 1 -2.6652 1.7332 4.2791 21 1 -0.5400 0.9354 0.0004 22 1 -0.5401 -0.9352 -0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3586 2.1316 0.0897 25 1 2.6212 1.4026 -0.9314 26 1 4.5811 2.9217 1.2119 27 1 2.8700 3.5431 1.2345 28 1 3.0152 3.0299 3.6395 29 1 4.2885 1.7669 3.3568 30 1 4.0985 -1.3158 3.7100 31 1 4.5409 -0.1198 2.4681 32 1 4.3632 0.3843 4.1660 33 1 2.1222 0.8614 5.0923 34 1 1.9338 -0.9066 5.0099 35 1 0.8080 0.0297 6.6904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934460012.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:09 Heat of formation + Delta-G solvation = 27.649309 kcal Electronic energy + Delta-G solvation = -14419.951443 eV Core-core repulsion = 12225.574871 eV Total energy + Delta-G solvation = -2194.376572 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.57813 -36.29104 -35.33359 -33.74504 -29.43651 -28.94835 -28.22344 -25.04348 -24.36233 -21.83973 -20.63161 -19.80557 -18.85511 -17.49523 -16.36171 -15.82754 -15.65224 -15.16287 -15.12481 -14.77712 -14.31397 -13.77348 -13.46871 -13.14373 -12.85854 -12.70221 -12.52815 -12.25590 -12.02442 -11.96749 -11.91699 -11.63527 -11.27695 -11.20582 -10.63150 -10.47939 -10.00181 -9.35891 -8.57904 -6.22680 1.50151 1.53051 1.59525 1.78309 2.59978 3.16851 3.29359 3.59429 3.88496 4.02859 4.15528 4.25796 4.31352 4.42673 4.50381 4.52459 4.64788 4.69524 4.80389 4.91816 5.00068 5.03985 5.05713 5.08459 5.17637 5.18170 5.40556 5.49487 5.75194 5.86870 6.00790 6.13346 6.32797 6.45718 6.73128 7.54557 8.82844 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.027014 B = 0.011315 C = 0.009260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.248396 B = 2474.052382 C = 3023.023524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.070 4.070 4 C 0.022 3.978 5 H 0.087 0.913 6 C -0.120 4.120 7 C -0.024 4.024 8 N -0.466 5.466 9 C 0.068 3.932 10 H 0.059 0.941 11 C -0.176 4.176 12 C 0.027 3.973 13 C -0.572 4.572 14 H 0.050 0.950 15 C -0.048 4.048 16 N -0.950 5.950 17 Si 1.113 2.887 18 H -0.270 1.270 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.057 0.943 33 H -0.019 1.019 34 H -0.017 1.017 35 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 2.609 -13.711 16.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C -0.107 4.107 4 C -0.087 4.087 5 H 0.105 0.895 6 C -0.158 4.158 7 C -0.153 4.153 8 N -0.188 5.188 9 C -0.041 4.041 10 H 0.077 0.923 11 C -0.234 4.234 12 C -0.010 4.010 13 C -0.611 4.611 14 H 0.068 0.932 15 C -0.244 4.244 16 N -0.589 5.589 17 Si 0.935 3.065 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.200 1.200 21 H 0.108 0.892 22 H 0.111 0.889 23 H 0.122 0.878 24 H 0.078 0.922 25 H 0.117 0.883 26 H 0.119 0.881 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.075 0.925 33 H -0.001 1.001 34 H 0.001 0.999 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.852 2.856 -12.893 14.444 hybrid contribution 2.124 -0.694 -0.012 2.234 sum 7.976 2.162 -12.905 15.324 Atomic orbital electron populations 1.23791 0.96541 1.01441 1.02028 1.22884 0.95985 0.98753 0.99109 1.20660 0.97638 0.94907 0.97523 1.23528 0.95756 0.97930 0.91475 0.89502 1.23112 1.02553 0.96055 0.94046 1.24001 0.95807 0.97035 0.98453 1.69188 1.39042 1.07415 1.03185 1.21841 0.93817 0.92439 0.95999 0.92299 1.22472 0.96924 1.01786 1.02237 1.19071 0.95868 0.93086 0.93025 1.22272 0.93100 1.50973 0.94708 0.93209 1.27257 1.10402 0.94061 0.92646 1.70924 1.15874 1.50083 1.22063 0.82986 0.70268 0.77650 0.75595 1.19583 1.21144 1.19969 0.89183 0.88894 0.87765 0.92152 0.88317 0.88149 0.89310 0.92697 0.89489 0.92428 0.90182 0.92453 1.00056 0.99933 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.36 14.32 67.78 0.97 -5.39 16 2 C -0.15 -4.41 8.58 25.65 0.22 -4.19 16 3 C -0.07 -1.83 5.71 29.85 0.17 -1.66 16 4 C 0.02 0.62 2.88 42.18 0.12 0.74 16 5 H 0.09 2.18 5.90 -2.39 -0.01 2.17 16 6 C -0.12 -2.92 8.01 30.94 0.25 -2.68 16 7 C -0.02 -0.79 7.23 83.57 0.60 -0.18 16 8 N -0.47 -17.78 5.70 -876.92 -5.00 -22.78 16 9 C 0.07 2.85 2.31 44.92 0.10 2.95 16 10 H 0.06 2.57 7.39 -2.39 -0.02 2.55 16 11 C -0.18 -5.75 7.74 71.98 0.56 -5.20 16 12 C 0.03 1.44 3.88 29.85 0.12 1.56 16 13 C -0.57 -34.06 8.84 25.60 0.23 -33.83 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 15 C -0.05 -2.95 5.46 84.65 0.46 -2.49 16 16 N -0.95 -61.77 13.65 21.45 0.29 -61.47 16 17 Si 1.11 53.73 29.90 68.60 2.05 55.78 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 21 H 0.09 2.86 7.84 -2.91 -0.02 2.84 16 22 H 0.09 2.82 8.06 -2.91 -0.02 2.80 16 23 H 0.10 2.91 8.06 -2.91 -0.02 2.89 16 24 H 0.06 1.72 7.73 -2.39 -0.02 1.70 16 25 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.09 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.09 2.59 4.86 -2.39 -0.01 2.58 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.10 5.81 -2.38 -0.01 2.08 16 32 H 0.06 1.88 6.48 -2.39 -0.02 1.87 16 33 H -0.02 -1.10 7.89 -2.39 -0.02 -1.12 16 34 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 35 H 0.25 16.51 7.22 -92.71 -0.67 15.84 16 Total: -1.00 -69.57 279.15 2.28 -67.29 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 1.13 Total: 11.56 kcal Atomic # 6 Polarization: -54.17 SS G_CDS: 3.80 Total: -50.37 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -4.71 Total: -84.26 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 2.05 Total: 55.78 kcal Total: -69.57 2.28 -67.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934460012.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.939 kcal (2) G-P(sol) polarization free energy of solvation -69.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds