Wall clock time and date at job start Thu Apr 9 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99941 * 2 1 4 4 C 1.53006 * 109.47099 * 115.20659 * 3 2 1 5 5 H 1.08998 * 112.78825 * 284.37344 * 4 3 2 6 6 C 1.53517 * 113.47524 * 153.56551 * 4 3 2 7 7 C 1.53510 * 83.57414 * 219.21102 * 6 4 3 8 8 N 1.47480 * 113.47585 * 55.18414 * 4 3 2 9 9 C 1.46889 * 111.00044 * 253.46943 * 8 4 3 10 10 H 1.09006 * 109.47214 * 214.58178 * 9 8 4 11 11 C 1.52997 * 109.47300 * 334.58643 * 9 8 4 12 12 C 1.53001 * 109.47201 * 94.58392 * 9 8 4 13 13 C 1.50705 * 109.47165 * 54.58404 * 12 9 8 14 14 H 1.08004 * 119.99314 * 354.98522 * 13 12 9 15 15 C 1.37872 * 120.00091 * 174.98296 * 13 12 9 16 16 N 1.31513 * 120.00026 * 5.23773 * 15 13 12 17 17 Si 1.86803 * 119.99730 * 185.23299 * 15 13 12 18 18 H 1.48504 * 109.46885 * 84.99606 * 17 15 13 19 19 H 1.48497 * 109.46873 * 204.99003 * 17 15 13 20 20 H 1.48498 * 109.47429 * 324.99502 * 17 15 13 21 21 H 1.07996 * 120.00019 * 5.04121 * 1 2 3 22 22 H 1.07997 * 119.99442 * 185.04519 * 1 2 3 23 23 H 1.08003 * 120.00194 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47541 * 355.20929 * 3 2 1 25 25 H 1.09001 * 109.47356 * 235.20318 * 3 2 1 26 26 H 1.08999 * 114.16955 * 105.56131 * 6 4 3 27 27 H 1.08999 * 114.17142 * 332.85706 * 6 4 3 28 28 H 1.09008 * 113.47552 * 271.25906 * 7 6 4 29 29 H 1.09000 * 113.53191 * 140.80134 * 7 6 4 30 30 H 1.08997 * 109.47606 * 64.09186 * 11 9 8 31 31 H 1.09001 * 109.47423 * 184.09581 * 11 9 8 32 32 H 1.09002 * 109.47115 * 304.09081 * 11 9 8 33 33 H 1.09001 * 109.47224 * 294.58619 * 12 9 8 34 34 H 1.09001 * 109.47181 * 174.58173 * 12 9 8 35 35 H 0.96998 * 120.00046 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.8505 1.4396 1.3052 5 1 2.2180 1.6957 2.1551 6 6 4.0957 2.3288 1.1796 7 6 4.7299 1.2736 2.0966 8 7 3.7538 0.3034 1.5663 9 6 3.2271 -0.5525 2.6375 10 1 4.0549 -0.9545 3.2217 11 6 2.3142 0.2723 3.5470 12 6 2.4292 -1.7048 2.0239 13 6 3.2903 -2.4373 1.0272 14 1 4.2761 -2.0656 0.7894 15 6 2.8196 -3.5816 0.4192 16 7 1.5831 -3.9771 0.6296 17 14 3.9382 -4.5703 -0.7037 18 1 4.7526 -5.5084 0.1101 19 1 3.1144 -5.3402 -1.6700 20 1 4.8369 -3.6484 -1.4437 21 1 -0.5400 0.9317 -0.0822 22 1 -0.5399 -0.9317 0.0823 23 1 1.8501 -0.9353 0.0004 24 1 1.3583 2.1318 -0.0858 25 1 2.7531 1.3265 -0.8439 26 1 3.9897 3.3123 1.6374 27 1 4.5210 2.3621 0.1766 28 1 4.5988 1.4853 3.1579 29 1 5.7620 1.0365 1.8385 30 1 1.4483 0.6136 2.9797 31 1 1.9813 -0.3435 4.3826 32 1 2.8625 1.1343 3.9269 33 1 1.5475 -1.3086 1.5202 34 1 2.1198 -2.3923 2.8111 35 1 1.2521 -4.7824 0.2021 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934460013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:11 Heat of formation + Delta-G solvation = 64.578142 kcal Electronic energy + Delta-G solvation = -14717.142953 eV Core-core repulsion = 12524.367735 eV Total energy + Delta-G solvation = -2192.775218 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.20284 -34.10496 -33.76063 -31.83503 -28.09225 -27.38551 -26.53594 -23.09041 -22.89448 -20.23789 -19.16540 -17.97722 -16.26752 -15.56450 -14.98330 -14.50949 -14.09240 -14.02120 -13.05272 -12.55880 -12.23428 -12.11920 -11.82646 -11.62997 -11.59206 -11.10279 -10.77086 -10.64836 -10.55239 -10.30335 -9.92039 -9.77316 -9.46857 -9.17339 -8.95942 -8.40792 -8.04191 -7.84596 -5.87076 -3.83638 3.23030 3.40796 3.46860 3.51366 4.56931 4.62898 4.89267 5.24660 5.46510 5.61359 5.67045 5.76645 5.81066 5.87477 5.92491 6.00620 6.07206 6.13797 6.24572 6.34040 6.39147 6.45013 6.51221 6.69417 7.00142 7.03729 7.21732 7.64562 7.75959 7.86435 7.95105 8.03047 8.15947 8.64215 9.24870 9.77338 11.24057 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.011710 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.832924 B = 2390.521873 C = 2608.936471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.134 4.134 3 C -0.073 4.073 4 C 0.017 3.983 5 H 0.089 0.911 6 C -0.145 4.145 7 C -0.013 4.013 8 N -0.428 5.428 9 C 0.050 3.950 10 H 0.063 0.937 11 C -0.180 4.180 12 C 0.013 3.987 13 C -0.489 4.489 14 H 0.063 0.937 15 C 0.052 3.948 16 N -0.900 5.900 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.275 1.275 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.166 0.834 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.045 0.955 34 H 0.013 0.987 35 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.824 11.087 1.986 11.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.151 4.151 3 C -0.111 4.111 4 C -0.092 4.092 5 H 0.107 0.893 6 C -0.183 4.183 7 C -0.142 4.142 8 N -0.150 5.150 9 C -0.059 4.059 10 H 0.082 0.918 11 C -0.239 4.239 12 C -0.024 4.024 13 C -0.527 4.527 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.540 5.540 17 Si 0.713 3.287 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.200 1.200 21 H 0.092 0.908 22 H 0.112 0.888 23 H 0.183 0.817 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.882 10.442 1.420 10.705 hybrid contribution 0.253 -0.250 0.221 0.419 sum 2.135 10.192 1.641 10.542 Atomic orbital electron populations 1.23621 0.96294 1.00323 1.06897 1.23911 0.96202 1.00805 0.94191 1.20627 0.98080 0.95572 0.96817 1.23680 0.94659 0.92390 0.98450 0.89336 1.23240 0.97643 0.96668 1.00699 1.23714 0.99201 0.93997 0.97306 1.69299 1.06092 1.08280 1.31337 1.22298 0.96997 0.95601 0.91023 0.91847 1.22525 1.00928 0.99901 1.00514 1.19607 0.96036 0.90859 0.95859 1.21169 1.01912 1.07359 1.22305 0.91842 1.25010 0.94874 0.97801 0.97095 1.69972 1.14701 1.24420 1.44917 0.86719 0.80898 0.80349 0.80694 1.21018 1.21663 1.19954 0.90787 0.88771 0.81676 0.92908 0.91277 0.91826 0.89403 0.92322 0.90568 0.91898 0.92635 0.94010 0.93726 0.96855 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.56 14.09 29.01 0.41 -4.15 16 2 C -0.13 -2.76 6.76 -36.03 -0.24 -3.01 16 3 C -0.07 -1.26 5.84 -27.88 -0.16 -1.43 16 4 C 0.02 0.29 2.68 -71.43 -0.19 0.10 16 5 H 0.09 1.43 4.60 -51.93 -0.24 1.19 16 6 C -0.14 -2.02 8.00 -26.20 -0.21 -2.23 16 7 C -0.01 -0.20 7.51 -7.55 -0.06 -0.26 16 8 N -0.43 -8.23 5.01 -228.50 -1.14 -9.38 16 9 C 0.05 1.02 2.43 -67.72 -0.16 0.85 16 10 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 11 C -0.18 -3.12 7.64 37.16 0.28 -2.83 16 12 C 0.01 0.33 3.97 -27.88 -0.11 0.22 16 13 C -0.49 -13.46 7.22 -34.44 -0.25 -13.71 16 14 H 0.06 1.78 7.41 -52.48 -0.39 1.39 16 15 C 0.05 1.47 5.45 -17.82 -0.10 1.37 16 16 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 17 Si 0.88 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 H 0.07 1.24 7.84 -52.49 -0.41 0.83 16 22 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 23 H 0.17 4.14 4.48 -52.48 -0.24 3.90 16 24 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 25 H 0.07 1.18 7.88 -51.93 -0.41 0.77 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.21 7.94 -51.93 -0.41 0.79 16 28 H 0.06 0.85 6.53 -51.92 -0.34 0.51 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.11 6.41 -51.93 -0.33 0.77 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.62 6.33 -51.93 -0.33 0.30 16 33 H 0.04 1.15 4.21 -51.93 -0.22 0.93 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 269.18 15.07 4.06 4.06 Total: -1.00 -28.79 269.18 -7.55 -36.35 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.39 Total: 2.90 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -0.79 Total: -25.07 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: -0.41 Total: -35.24 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.79 -7.55 -36.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934460013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.925 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds