Wall clock time and date at job start Thu Apr 9 2020 11:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99941 * 2 1 4 4 C 1.53006 * 109.47099 * 115.20659 * 3 2 1 5 5 H 1.08998 * 112.78825 * 284.37344 * 4 3 2 6 6 C 1.53517 * 113.47524 * 153.56551 * 4 3 2 7 7 C 1.53510 * 83.57414 * 219.21102 * 6 4 3 8 8 N 1.47480 * 113.47585 * 55.18414 * 4 3 2 9 9 C 1.46889 * 111.00044 * 253.46943 * 8 4 3 10 10 H 1.09006 * 109.47214 * 214.58178 * 9 8 4 11 11 C 1.52997 * 109.47300 * 334.58643 * 9 8 4 12 12 C 1.53001 * 109.47201 * 94.58392 * 9 8 4 13 13 C 1.50705 * 109.47165 * 54.58404 * 12 9 8 14 14 H 1.08004 * 119.99314 * 354.98522 * 13 12 9 15 15 C 1.37872 * 120.00091 * 174.98296 * 13 12 9 16 16 N 1.31513 * 120.00026 * 5.23773 * 15 13 12 17 17 Si 1.86803 * 119.99730 * 185.23299 * 15 13 12 18 18 H 1.48504 * 109.46885 * 84.99606 * 17 15 13 19 19 H 1.48497 * 109.46873 * 204.99003 * 17 15 13 20 20 H 1.48498 * 109.47429 * 324.99502 * 17 15 13 21 21 H 1.07996 * 120.00019 * 5.04121 * 1 2 3 22 22 H 1.07997 * 119.99442 * 185.04519 * 1 2 3 23 23 H 1.08003 * 120.00194 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47541 * 355.20929 * 3 2 1 25 25 H 1.09001 * 109.47356 * 235.20318 * 3 2 1 26 26 H 1.08999 * 114.16955 * 105.56131 * 6 4 3 27 27 H 1.08999 * 114.17142 * 332.85706 * 6 4 3 28 28 H 1.09008 * 113.47552 * 271.25906 * 7 6 4 29 29 H 1.09000 * 113.53191 * 140.80134 * 7 6 4 30 30 H 1.08997 * 109.47606 * 64.09186 * 11 9 8 31 31 H 1.09001 * 109.47423 * 184.09581 * 11 9 8 32 32 H 1.09002 * 109.47115 * 304.09081 * 11 9 8 33 33 H 1.09001 * 109.47224 * 294.58619 * 12 9 8 34 34 H 1.09001 * 109.47181 * 174.58173 * 12 9 8 35 35 H 0.96998 * 120.00046 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.8505 1.4396 1.3052 5 1 2.2180 1.6957 2.1551 6 6 4.0957 2.3288 1.1796 7 6 4.7299 1.2736 2.0966 8 7 3.7538 0.3034 1.5663 9 6 3.2271 -0.5525 2.6375 10 1 4.0549 -0.9545 3.2217 11 6 2.3142 0.2723 3.5470 12 6 2.4292 -1.7048 2.0239 13 6 3.2903 -2.4373 1.0272 14 1 4.2761 -2.0656 0.7894 15 6 2.8196 -3.5816 0.4192 16 7 1.5831 -3.9771 0.6296 17 14 3.9382 -4.5703 -0.7037 18 1 4.7526 -5.5084 0.1101 19 1 3.1144 -5.3402 -1.6700 20 1 4.8369 -3.6484 -1.4437 21 1 -0.5400 0.9317 -0.0822 22 1 -0.5399 -0.9317 0.0823 23 1 1.8501 -0.9353 0.0004 24 1 1.3583 2.1318 -0.0858 25 1 2.7531 1.3265 -0.8439 26 1 3.9897 3.3123 1.6374 27 1 4.5210 2.3621 0.1766 28 1 4.5988 1.4853 3.1579 29 1 5.7620 1.0365 1.8385 30 1 1.4483 0.6136 2.9797 31 1 1.9813 -0.3435 4.3826 32 1 2.8625 1.1343 3.9269 33 1 1.5475 -1.3086 1.5202 34 1 2.1198 -2.3923 2.8111 35 1 1.2521 -4.7824 0.2021 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934460013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:11 Heat of formation + Delta-G solvation = 46.547436 kcal Electronic energy + Delta-G solvation = -14717.924823 eV Core-core repulsion = 12524.367735 eV Total energy + Delta-G solvation = -2193.557088 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55092 -35.86838 -35.31919 -33.74002 -29.51483 -29.26401 -27.86064 -25.05062 -24.21423 -21.80641 -20.62976 -19.37249 -18.32982 -17.08795 -16.60588 -16.31726 -15.63708 -15.43744 -14.58724 -14.01835 -13.97555 -13.64621 -13.50713 -13.35427 -12.98092 -12.71424 -12.45511 -12.35824 -12.07352 -11.91171 -11.39465 -11.30665 -11.16552 -11.07595 -10.75604 -10.45517 -9.77307 -9.24659 -8.05996 -6.07514 1.40432 1.40947 1.51190 1.65220 2.48417 3.24144 3.34214 3.70441 4.01502 4.15776 4.37753 4.43678 4.45242 4.52116 4.60538 4.63443 4.77925 4.87434 4.92224 4.96499 5.07659 5.15679 5.21547 5.27545 5.41128 5.47858 5.59291 5.73966 5.89544 6.04798 6.13776 6.30779 6.41405 6.63055 7.06924 7.56277 9.05110 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.029472 B = 0.011710 C = 0.010730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.832924 B = 2390.521873 C = 2608.936471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.147 4.147 3 C -0.068 4.068 4 C 0.012 3.988 5 H 0.098 0.902 6 C -0.123 4.123 7 C -0.013 4.013 8 N -0.466 5.466 9 C 0.056 3.944 10 H 0.051 0.949 11 C -0.170 4.170 12 C 0.017 3.983 13 C -0.487 4.487 14 H 0.056 0.944 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.945 3.055 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.269 1.269 21 H 0.110 0.890 22 H 0.068 0.932 23 H 0.119 0.881 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.038 0.962 34 H -0.024 1.024 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 13.505 1.963 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.165 4.165 3 C -0.105 4.105 4 C -0.097 4.097 5 H 0.116 0.884 6 C -0.160 4.160 7 C -0.142 4.142 8 N -0.188 5.188 9 C -0.053 4.053 10 H 0.069 0.931 11 C -0.228 4.228 12 C -0.020 4.020 13 C -0.526 4.526 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.575 5.575 17 Si 0.771 3.229 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.194 1.194 21 H 0.129 0.871 22 H 0.086 0.914 23 H 0.136 0.864 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.056 0.944 34 H -0.006 1.006 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.662 12.867 1.400 13.214 hybrid contribution 0.003 -1.005 0.223 1.029 sum 2.665 11.863 1.623 12.266 Atomic orbital electron populations 1.23663 0.95991 1.00779 1.05901 1.23727 0.96592 1.00903 0.95268 1.20640 0.98327 0.94285 0.97293 1.23815 0.95504 0.92068 0.98267 0.88427 1.23156 0.94857 0.97356 1.00645 1.23800 0.98418 0.93375 0.98586 1.69219 1.08131 1.09997 1.31450 1.22009 0.96473 0.95118 0.91679 0.93096 1.22391 1.00384 1.00399 0.99617 1.19499 0.96341 0.91863 0.94299 1.21376 1.01568 1.07379 1.22243 0.92623 1.25740 0.96084 0.99074 0.98760 1.70094 1.16261 1.24883 1.46298 0.85765 0.79164 0.78951 0.78971 1.20436 1.21495 1.19418 0.87141 0.91381 0.86357 0.89968 0.91512 0.88444 0.89251 0.90774 0.90645 0.92147 0.92833 0.90841 0.94371 1.00602 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.70 14.09 67.78 0.96 -7.74 16 2 C -0.15 -6.05 6.76 25.64 0.17 -5.88 16 3 C -0.07 -2.18 5.84 29.85 0.17 -2.01 16 4 C 0.01 0.38 2.68 42.19 0.11 0.49 16 5 H 0.10 2.80 4.60 -2.39 -0.01 2.79 16 6 C -0.12 -2.91 8.00 30.94 0.25 -2.66 16 7 C -0.01 -0.36 7.51 83.57 0.63 0.26 16 8 N -0.47 -17.30 5.01 -876.84 -4.39 -21.69 16 9 C 0.06 2.30 2.43 44.92 0.11 2.41 16 10 H 0.05 2.16 8.07 -2.38 -0.02 2.14 16 11 C -0.17 -5.58 7.64 71.98 0.55 -5.03 16 12 C 0.02 0.87 3.97 29.85 0.12 0.99 16 13 C -0.49 -27.63 7.22 25.60 0.18 -27.44 16 14 H 0.06 3.18 7.41 -2.91 -0.02 3.16 16 15 C 0.00 -0.02 5.45 84.65 0.46 0.44 16 16 N -0.93 -57.18 13.29 21.45 0.29 -56.89 16 17 Si 0.94 46.15 29.54 68.60 2.03 48.17 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H 0.11 3.41 7.84 -2.91 -0.02 3.38 16 22 H 0.07 2.93 8.06 -2.91 -0.02 2.90 16 23 H 0.12 6.12 4.48 -2.91 -0.01 6.11 16 24 H 0.08 2.15 7.79 -2.39 -0.02 2.14 16 25 H 0.07 2.15 7.88 -2.39 -0.02 2.14 16 26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 2.12 7.94 -2.39 -0.02 2.10 16 28 H 0.07 1.86 6.53 -2.38 -0.02 1.84 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 2.02 6.41 -2.39 -0.02 2.00 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.94 6.33 -2.39 -0.02 1.93 16 33 H 0.04 2.05 4.21 -2.39 -0.01 2.04 16 34 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -64.17 269.18 2.68 -61.49 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.05 Total: 15.08 kcal Atomic # 6 Polarization: -49.88 SS G_CDS: 3.71 Total: -46.17 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -4.11 Total: -78.58 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -64.17 2.68 -61.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934460013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.037 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds