Wall clock time and date at job start Thu Apr 9 2020 11:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76197 * 103.00075 * 2 1 4 4 C 1.39756 * 120.82825 * 0.02562 * 3 2 1 5 5 C 1.37795 * 119.23826 * 179.97438 * 4 3 2 6 6 N 1.32032 * 120.95380 * 359.72405 * 5 4 3 7 7 C 1.32617 * 121.81762 * 0.56313 * 6 5 4 8 8 N 1.38877 * 119.67362 * 179.70934 * 7 6 5 9 9 C 1.36917 * 120.00258 * 179.73278 * 8 7 6 10 10 H 1.08002 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99841 * 179.72350 * 9 8 7 12 12 N 1.31564 * 120.00293 * 0.27493 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27667 * 11 9 8 14 14 H 1.48496 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 C 1.38898 * 120.66101 * 359.44073 * 7 6 5 18 18 H 1.08997 * 109.47538 * 299.99953 * 1 2 3 19 19 H 1.09003 * 109.47410 * 60.00221 * 1 2 3 20 20 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 21 21 H 1.08003 * 120.38015 * 359.95752 * 4 3 2 22 22 H 1.08003 * 119.52516 * 179.97438 * 5 4 3 23 23 H 0.97000 * 120.00074 * 359.73063 * 8 7 6 24 24 H 0.96996 * 120.00423 * 179.97438 * 12 11 9 25 25 H 1.08003 * 120.51227 * 180.29110 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2021 2.6846 0.0005 5 6 1.5492 4.0181 0.0011 6 7 2.8160 4.3901 0.0065 7 6 3.8044 3.5059 0.0006 8 7 5.1213 3.9468 0.0006 9 6 6.1470 3.0397 0.0001 10 1 5.9319 1.9813 -0.0008 11 6 7.4633 3.4805 -0.0057 12 7 7.7254 4.7697 -0.0052 13 14 8.8626 2.2430 -0.0142 14 1 8.3059 0.8663 -0.0128 15 1 9.6912 2.4411 -1.2305 16 1 9.7030 2.4377 1.1945 17 6 3.5356 2.1431 0.0000 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.1628 2.3907 0.0003 22 1 0.7738 4.7700 0.0011 23 1 5.3146 4.8973 0.0010 24 1 8.6451 5.0777 -0.0089 25 1 4.3424 1.4251 -0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155534670.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:19 Heat of formation + Delta-G solvation = 35.273173 kcal Electronic energy + Delta-G solvation = -11196.769342 eV Core-core repulsion = 9108.384136 eV Total energy + Delta-G solvation = -2088.385206 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.95821 -35.31944 -32.11627 -31.36740 -29.26800 -28.07153 -24.95164 -22.78572 -21.45407 -17.93551 -17.53646 -15.57569 -15.38696 -14.91654 -14.35706 -13.68660 -13.65766 -13.45201 -13.13786 -12.92300 -12.02269 -11.84222 -11.40237 -11.18740 -10.56904 -10.43781 -10.36198 -10.01273 -9.70505 -8.82847 -8.38998 -7.14648 -7.07353 -6.67215 -3.88648 1.91697 2.16854 2.31985 2.80661 3.11161 3.13372 3.18129 3.95369 4.62643 4.88353 5.19338 5.19405 5.21918 5.55273 5.72477 5.95671 6.26461 6.34952 6.62984 6.88147 6.94864 7.24072 7.45132 7.80776 8.55160 8.90175 9.24921 9.63101 10.48945 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.040827 B = 0.008607 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.654918 B = 3252.326532 C = 3922.833702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.134 6.134 3 C 0.003 3.997 4 C -0.321 4.321 5 C 0.176 3.824 6 N -0.579 5.579 7 C 0.373 3.627 8 N -0.527 5.527 9 C -0.303 4.303 10 H 0.106 0.894 11 C 0.025 3.975 12 N -0.882 5.882 13 Si 0.936 3.064 14 H -0.265 1.265 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.233 4.233 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.099 0.901 21 H 0.110 0.890 22 H 0.138 0.862 23 H 0.405 0.595 24 H 0.277 0.723 25 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.992 -6.380 -0.017 11.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.106 5.894 3 C -0.116 4.116 4 C -0.353 4.353 5 C 0.011 3.989 6 N -0.301 5.301 7 C 0.128 3.872 8 N -0.132 5.132 9 C -0.433 4.433 10 H 0.123 0.877 11 C -0.180 4.180 12 N -0.518 5.518 13 Si 0.762 3.238 14 H -0.189 1.189 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.267 4.267 18 H 0.100 0.900 19 H 0.100 0.900 20 H 0.117 0.883 21 H 0.128 0.872 22 H 0.155 0.845 23 H 0.241 0.759 24 H 0.087 0.913 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.550 -6.510 -0.011 9.969 hybrid contribution -0.264 0.154 -0.010 0.306 sum -7.814 -6.356 -0.021 10.072 Atomic orbital electron populations 1.23541 0.95585 1.05990 1.05551 1.85254 1.05593 1.05529 1.93057 1.21523 0.96320 0.94661 0.99105 1.21099 0.97400 0.94111 1.22697 1.21847 0.91923 0.93351 0.91819 1.67130 0.99863 1.37913 1.25190 1.18101 0.85817 0.88276 0.95055 1.40848 1.00152 1.09722 1.62479 1.19831 0.84545 0.90741 1.48227 0.87651 1.25373 0.98856 0.97017 0.96753 1.69706 1.21641 1.13277 1.47130 0.85697 0.80060 0.79935 0.78132 1.18916 1.20339 1.20342 1.20674 0.94396 0.95484 1.16153 0.90024 0.90019 0.88254 0.87187 0.84514 0.75907 0.91269 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 101.05 0.93 -0.67 15 2 S -0.13 -2.19 22.60 -107.50 -2.43 -4.62 15 3 C 0.00 0.07 6.16 -38.65 -0.24 -0.17 15 4 C -0.32 -5.93 9.43 -39.18 -0.37 -6.30 15 5 C 0.18 3.42 11.16 -17.63 -0.20 3.22 15 6 N -0.58 -13.37 10.39 -12.53 -0.13 -13.50 15 7 C 0.37 9.13 7.61 -155.05 -1.18 7.95 15 8 N -0.53 -13.70 5.44 -11.19 -0.06 -13.76 15 9 C -0.30 -7.90 9.54 -15.07 -0.14 -8.04 15 10 H 0.11 2.65 5.65 -52.49 -0.30 2.35 15 11 C 0.03 0.64 5.50 -17.45 -0.10 0.55 15 12 N -0.88 -23.61 13.05 55.49 0.72 -22.88 15 13 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 15 14 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 15 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 16 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 17 C -0.23 -5.33 9.12 -38.97 -0.36 -5.69 15 18 H 0.08 0.90 7.79 -51.93 -0.40 0.50 15 19 H 0.08 0.90 7.79 -51.92 -0.40 0.50 15 20 H 0.10 0.91 8.14 -51.92 -0.42 0.49 15 21 H 0.11 1.69 6.07 -52.48 -0.32 1.37 15 22 H 0.14 2.13 8.06 -52.48 -0.42 1.71 15 23 H 0.40 10.85 8.01 -40.82 -0.33 10.52 15 24 H 0.28 6.93 8.31 -40.82 -0.34 6.59 15 25 H 0.13 2.93 5.93 -52.48 -0.31 2.62 15 LS Contribution 235.83 15.07 3.55 3.55 Total: -1.00 -27.81 235.83 -7.06 -34.87 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.04 Total: 10.77 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.65 Total: -9.15 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.53 Total: -50.14 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.43 Total: -4.62 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -27.81 -7.06 -34.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534670.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.144 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds