Wall clock time and date at job start Thu Apr 9 2020 11:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 C 1.76197 * 103.00075 * 2 1 4 4 C 1.39756 * 120.82825 * 0.02562 * 3 2 1 5 5 C 1.37795 * 119.23826 * 179.97438 * 4 3 2 6 6 N 1.32032 * 120.95380 * 359.72405 * 5 4 3 7 7 C 1.32617 * 121.81762 * 0.56313 * 6 5 4 8 8 N 1.38877 * 119.67362 * 179.70934 * 7 6 5 9 9 C 1.36917 * 120.00258 * 179.73278 * 8 7 6 10 10 H 1.08002 * 120.00277 * 0.02562 * 9 8 7 11 11 C 1.38817 * 119.99841 * 179.72350 * 9 8 7 12 12 N 1.31564 * 120.00293 * 0.27493 * 11 9 8 13 13 Si 1.86803 * 119.99862 * 180.27667 * 11 9 8 14 14 H 1.48496 * 109.47187 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47141 * 119.99997 * 13 11 9 16 16 H 1.48498 * 109.47018 * 240.00044 * 13 11 9 17 17 C 1.38898 * 120.66101 * 359.44073 * 7 6 5 18 18 H 1.08997 * 109.47538 * 299.99953 * 1 2 3 19 19 H 1.09003 * 109.47410 * 60.00221 * 1 2 3 20 20 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 21 21 H 1.08003 * 120.38015 * 359.95752 * 4 3 2 22 22 H 1.08003 * 119.52516 * 179.97438 * 5 4 3 23 23 H 0.97000 * 120.00074 * 359.73063 * 8 7 6 24 24 H 0.96996 * 120.00423 * 179.97438 * 12 11 9 25 25 H 1.08003 * 120.51227 * 180.29110 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2021 2.6846 0.0005 5 6 1.5492 4.0181 0.0011 6 7 2.8160 4.3901 0.0065 7 6 3.8044 3.5059 0.0006 8 7 5.1213 3.9468 0.0006 9 6 6.1470 3.0397 0.0001 10 1 5.9319 1.9813 -0.0008 11 6 7.4633 3.4805 -0.0057 12 7 7.7254 4.7697 -0.0052 13 14 8.8626 2.2430 -0.0142 14 1 8.3059 0.8663 -0.0128 15 1 9.6912 2.4411 -1.2305 16 1 9.7030 2.4377 1.1945 17 6 3.5356 2.1431 0.0000 18 1 -0.3634 0.5138 0.8899 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 0.1628 2.3907 0.0003 22 1 0.7738 4.7700 0.0011 23 1 5.3146 4.8973 0.0010 24 1 8.6451 5.0777 -0.0089 25 1 4.3424 1.4251 -0.0001 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534670.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:19 Heat of formation + Delta-G solvation = 18.112851 kcal Electronic energy + Delta-G solvation = -11197.513469 eV Core-core repulsion = 9108.384136 eV Total energy + Delta-G solvation = -2089.129333 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.67547 -37.10924 -33.92500 -33.05868 -30.61916 -29.41496 -26.81093 -24.44143 -23.15850 -19.78426 -19.15156 -17.27183 -16.94264 -16.54196 -15.95385 -15.32153 -15.16174 -15.03307 -14.35429 -14.21826 -13.61564 -13.20757 -13.12060 -12.85591 -12.23759 -12.19795 -12.06599 -11.32489 -11.27779 -10.65081 -10.08492 -8.86202 -8.54203 -8.50831 -5.84886 0.50732 0.62764 0.66746 1.40681 1.46074 1.55422 1.57643 2.22524 2.84246 3.11483 3.37650 3.97516 4.36319 4.37899 4.40772 4.58281 4.65863 4.92184 4.97814 5.19091 5.22936 5.41517 5.67766 6.08917 6.67600 7.10753 7.38714 7.80524 8.64666 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.040827 B = 0.008607 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.654918 B = 3252.326532 C = 3922.833702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.146 6.146 3 C -0.001 4.001 4 C -0.298 4.298 5 C 0.166 3.834 6 N -0.603 5.603 7 C 0.362 3.638 8 N -0.558 5.558 9 C -0.322 4.322 10 H 0.105 0.895 11 C -0.024 4.024 12 N -0.924 5.924 13 Si 1.004 2.996 14 H -0.258 1.258 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.264 4.264 18 H 0.094 0.906 19 H 0.094 0.906 20 H 0.130 0.870 21 H 0.154 0.846 22 H 0.181 0.819 23 H 0.393 0.607 24 H 0.278 0.722 25 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.757 -8.064 -0.021 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.094 5.906 3 C -0.121 4.121 4 C -0.328 4.328 5 C 0.003 3.997 6 N -0.325 5.325 7 C 0.120 3.880 8 N -0.166 5.166 9 C -0.452 4.452 10 H 0.123 0.877 11 C -0.224 4.224 12 N -0.563 5.563 13 Si 0.826 3.174 14 H -0.182 1.182 15 H -0.200 1.200 16 H -0.200 1.200 17 C -0.297 4.297 18 H 0.113 0.887 19 H 0.113 0.887 20 H 0.148 0.852 21 H 0.172 0.828 22 H 0.198 0.802 23 H 0.227 0.773 24 H 0.087 0.913 25 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.394 -8.232 -0.015 13.259 hybrid contribution 0.118 0.569 -0.008 0.581 sum -10.276 -7.663 -0.023 12.818 Atomic orbital electron populations 1.23754 0.90789 1.08482 1.06755 1.85395 1.10700 1.02233 1.92246 1.21932 0.95523 0.97616 0.97021 1.21672 0.99171 0.93346 1.18657 1.22680 0.91437 0.95272 0.90297 1.67190 1.01150 1.38388 1.25815 1.18469 0.85817 0.89314 0.94392 1.40832 1.00856 1.08909 1.66033 1.20043 0.85274 0.90845 1.49006 0.87734 1.26271 1.00868 0.98779 0.96472 1.69812 1.21999 1.14977 1.49501 0.84699 0.76801 0.77802 0.78086 1.18170 1.19955 1.19957 1.20687 0.95814 0.94682 1.18561 0.88745 0.88735 0.85214 0.82814 0.80224 0.77317 0.91253 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.19 113.37 1.04 -1.25 15 2 S -0.15 -4.33 22.60 -56.49 -1.28 -5.61 15 3 C 0.00 -0.03 6.16 22.87 0.14 0.11 15 4 C -0.30 -9.81 9.43 22.53 0.21 -9.59 15 5 C 0.17 5.98 11.16 84.56 0.94 6.92 15 6 N -0.60 -27.69 10.39 -193.54 -2.01 -29.70 15 7 C 0.36 18.21 7.61 132.98 1.01 19.23 15 8 N -0.56 -30.59 5.44 -189.33 -1.03 -31.62 15 9 C -0.32 -17.62 9.54 84.04 0.80 -16.82 15 10 H 0.11 5.53 5.65 -2.91 -0.02 5.51 15 11 C -0.02 -1.27 5.50 84.87 0.47 -0.80 15 12 N -0.92 -51.87 13.05 21.65 0.28 -51.59 15 13 Si 1.00 41.70 29.55 68.60 2.03 43.73 15 14 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 15 H -0.27 -11.09 7.11 99.48 0.71 -10.39 15 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 17 C -0.26 -12.20 9.12 22.66 0.21 -11.99 15 18 H 0.09 1.51 7.79 -2.39 -0.02 1.49 15 19 H 0.09 1.51 7.79 -2.39 -0.02 1.49 15 20 H 0.13 1.62 8.14 -2.39 -0.02 1.60 15 21 H 0.15 3.72 6.07 -2.91 -0.02 3.71 15 22 H 0.18 4.80 8.06 -2.91 -0.02 4.77 15 23 H 0.39 22.46 8.01 -92.71 -0.74 21.71 15 24 H 0.28 14.53 8.31 -92.71 -0.77 13.76 15 25 H 0.11 5.48 5.93 -2.91 -0.02 5.46 15 Total: -1.00 -63.08 235.83 3.29 -59.78 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.48 Total: 29.20 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.83 Total: -14.20 kcal Atomic # 7 Polarization: -110.15 SS G_CDS: -2.76 Total: -112.90 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -1.28 Total: -5.61 kcal Total: -63.08 3.29 -59.78 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534670.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.897 kcal (2) G-P(sol) polarization free energy of solvation -63.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds