Wall clock time and date at job start Thu Apr 9 2020 11:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29314 * 1 3 3 Si 1.86798 * 119.99878 * 2 1 4 4 H 1.48504 * 109.47349 * 269.99834 * 3 2 1 5 5 H 1.48495 * 109.47208 * 30.00113 * 3 2 1 6 6 H 1.48501 * 109.47150 * 150.00211 * 3 2 1 7 7 C 1.46811 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00090 * 359.97438 * 7 2 1 9 9 N 1.32777 * 119.99811 * 180.27466 * 7 2 1 10 10 C 1.39020 * 119.99833 * 174.49271 * 9 7 2 11 11 C 1.39332 * 120.08651 * 5.74319 * 10 9 7 12 12 N 1.31986 * 119.88900 * 179.70737 * 11 10 9 13 13 C 1.32217 * 120.07342 * 0.54485 * 12 11 10 14 14 N 1.48014 * 119.91402 * 179.72843 * 13 12 11 15 15 O 1.31702 * 120.00225 * 180.02562 * 14 13 12 16 16 O 1.31698 * 119.99984 * 0.02586 * 14 13 12 17 17 C 1.38380 * 120.17701 * 359.75796 * 13 12 11 18 18 N 1.32095 * 120.10593 * 359.94922 * 17 13 12 19 19 H 0.96993 * 119.99982 * 0.02562 * 1 2 3 20 20 H 0.96992 * 120.00000 * 354.49309 * 9 7 2 21 21 H 1.08001 * 120.05896 * 359.97438 * 11 10 9 22 22 H 1.08006 * 119.94629 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2271 1.6177 0.0000 4 1 2.4747 2.0465 -1.4001 5 1 1.4246 2.6526 0.7000 6 1 3.5247 1.4402 0.7000 7 6 2.0272 -1.2714 -0.0006 8 1 1.4873 -2.2067 -0.0006 9 7 3.3550 -1.2714 0.0049 10 6 4.0496 -2.4701 0.1200 11 6 3.3601 -3.6807 0.1092 12 7 4.0240 -4.8167 0.2128 13 6 5.3402 -4.8059 0.3375 14 7 6.0807 -6.0817 0.4596 15 8 7.3917 -6.0729 0.5844 16 8 5.4285 -7.2257 0.4433 17 6 6.0274 -3.6049 0.3549 18 7 5.3706 -2.4640 0.2459 19 1 -0.4850 0.8400 -0.0004 20 1 3.8402 -0.4350 -0.0713 21 1 2.2845 -3.6899 0.0118 22 1 7.1026 -3.6003 0.4574 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186954.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:21 Heat of formation + Delta-G solvation = 54.758016 kcal Electronic energy + Delta-G solvation = -12886.889148 eV Core-core repulsion = 10253.055654 eV Total energy + Delta-G solvation = -2633.833494 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.78526 -39.40347 -37.56728 -36.14973 -34.68289 -33.49110 -31.39863 -28.23793 -26.36494 -25.24832 -23.15433 -21.95216 -19.52889 -18.72029 -18.34634 -17.68389 -16.88260 -16.48191 -16.28126 -15.81300 -15.39750 -14.86296 -14.47333 -14.00142 -13.77556 -12.94349 -12.31591 -12.17047 -11.97304 -11.64670 -10.86257 -10.74932 -10.73914 -10.17959 -9.82825 -9.78832 -6.40216 -1.32753 0.42467 0.72745 0.87954 1.17970 1.27306 1.38814 1.82698 1.85555 1.90823 3.04009 3.23797 3.54621 3.79898 3.90898 4.32287 4.49169 4.57936 4.77762 5.16394 5.51206 5.82153 6.50113 6.71906 6.85033 7.13380 7.74222 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.074293 B = 0.007241 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.796017 B = 3865.787676 C = 4229.869230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C 0.000 4.000 3 Si 0.949 3.051 4 H -0.228 1.228 5 H -0.224 1.224 6 H -0.236 1.236 7 C 0.098 3.902 8 H 0.201 0.799 9 N -0.344 5.344 10 C -0.033 4.033 11 C 0.149 3.851 12 N -0.498 5.498 13 C 0.048 3.952 14 N 0.012 4.988 15 O -0.550 6.550 16 O -0.557 6.557 17 C 0.091 3.909 18 N -0.424 5.424 19 H 0.366 0.634 20 H 0.424 0.576 21 H 0.205 0.795 22 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 28.075 -2.315 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.221 5.221 2 C -0.242 4.242 3 Si 0.762 3.238 4 H -0.150 1.150 5 H -0.146 1.146 6 H -0.159 1.159 7 C -0.078 4.078 8 H 0.218 0.782 9 N 0.072 4.928 10 C -0.262 4.262 11 C -0.043 4.043 12 N -0.214 5.214 13 C -0.190 4.190 14 N 0.337 4.663 15 O -0.637 6.637 16 O -0.645 6.645 17 C -0.099 4.099 18 N -0.143 5.143 19 H 0.185 0.815 20 H 0.267 0.733 21 H 0.221 0.779 22 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.470 27.397 -2.247 32.046 hybrid contribution 0.753 -0.121 0.049 0.764 sum -15.717 27.276 -2.198 31.557 Atomic orbital electron populations 1.68403 1.09067 1.39301 1.05360 1.28420 0.97167 1.02133 0.96499 0.85407 0.80637 0.74214 0.83566 1.15012 1.14608 1.15893 1.24794 0.81261 1.02259 0.99447 0.78214 1.41269 1.07011 1.09561 1.34959 1.17882 0.90260 0.85149 1.32916 1.23280 1.01011 0.84552 0.95495 1.66930 1.07079 1.31008 1.16363 1.20455 0.90295 0.82994 1.25283 1.48451 1.00227 1.01441 1.16166 1.95767 0.92610 1.96238 1.79100 1.95791 1.69770 1.19494 1.79490 1.21594 0.99620 0.84966 1.03747 1.67153 1.07449 1.27326 1.12363 0.81452 0.73345 0.77899 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.60 -4.73 13.88 23.26 0.32 -4.40 14 2 C 0.00 0.00 5.70 87.31 0.50 0.49 14 3 Si 0.95 3.95 27.82 68.60 1.91 5.86 14 4 H -0.23 -1.12 7.11 99.48 0.71 -0.42 14 5 H -0.22 -0.86 7.11 99.48 0.71 -0.16 14 6 H -0.24 -1.38 6.69 99.48 0.67 -0.71 14 7 C 0.10 1.04 10.31 86.79 0.89 1.94 14 8 H 0.20 1.81 5.84 -2.91 -0.02 1.79 14 9 N -0.34 -5.90 5.16 -184.97 -0.95 -6.85 14 10 C -0.03 -1.06 7.61 133.02 1.01 -0.04 14 11 C 0.15 5.50 10.47 84.93 0.89 6.39 14 12 N -0.50 -27.34 10.22 -185.16 -1.89 -29.23 14 13 C 0.05 2.98 7.82 129.58 1.01 3.99 14 14 N 0.01 0.95 4.98 -49.63 -0.25 0.71 14 15 O -0.55 -43.58 19.14 3.51 0.07 -43.51 14 16 O -0.56 -46.17 19.77 3.52 0.07 -46.10 14 17 C 0.09 4.80 10.75 84.69 0.91 5.71 14 18 N -0.42 -17.32 10.52 -192.53 -2.03 -19.34 14 19 H 0.37 1.22 8.26 -92.71 -0.77 0.46 14 20 H 0.42 5.30 6.13 -92.71 -0.57 4.73 14 21 H 0.20 4.84 5.98 -2.91 -0.02 4.83 14 22 H 0.15 8.03 7.57 -2.91 -0.02 8.01 14 Total: -1.00 -109.03 218.84 3.15 -105.88 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.69 Total: 18.52 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.22 Total: 18.48 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -4.80 Total: -59.12 kcal Atomic # 8 Polarization: -89.75 SS G_CDS: 0.14 Total: -89.61 kcal Atomic # 14 Polarization: 3.95 SS G_CDS: 1.91 Total: 5.86 kcal Total: -109.03 3.15 -105.88 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186954.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.635 kcal (2) G-P(sol) polarization free energy of solvation -109.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds