Wall clock time and date at job start Thu Apr 9 2020 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46644 * 2 1 4 4 H 1.08994 * 109.47551 * 55.23728 * 3 2 1 5 5 C 1.50711 * 109.46910 * 175.23557 * 3 2 1 6 6 H 1.07994 * 119.99614 * 119.99748 * 5 3 2 7 7 C 1.37877 * 119.99992 * 300.00111 * 5 3 2 8 8 N 1.31519 * 119.99863 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00017 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47009 * 59.99582 * 9 7 5 11 11 H 1.48496 * 109.46813 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46901 * 299.99935 * 9 7 5 13 13 N 1.46898 * 109.47349 * 295.23183 * 3 2 1 14 14 C 1.46896 * 111.00121 * 153.90050 * 13 3 2 15 15 H 1.08997 * 110.81774 * 32.62028 * 14 13 3 16 16 C 1.54895 * 110.75773 * 155.96317 * 14 13 3 17 17 C 1.54263 * 104.19416 * 156.25595 * 16 14 13 18 18 H 1.08998 * 117.41032 * 116.37268 * 17 16 14 19 19 C 1.52997 * 118.19982 * 272.20690 * 17 16 14 20 20 C 1.52997 * 60.37800 * 93.62087 * 19 17 16 21 21 H 1.08994 * 119.29725 * 111.31142 * 20 19 17 22 22 C 1.54266 * 118.19600 * 266.38457 * 20 19 17 23 23 H 1.09002 * 109.46854 * 176.19968 * 1 2 3 24 24 H 1.08999 * 109.47654 * 296.19610 * 1 2 3 25 25 H 1.09001 * 109.47034 * 56.20584 * 1 2 3 26 26 H 1.08995 * 109.47068 * 239.99840 * 2 1 3 27 27 H 1.08998 * 109.47123 * 119.99493 * 2 1 3 28 28 H 0.96999 * 119.99855 * 180.02562 * 8 7 5 29 29 H 1.00906 * 111.00425 * 277.85722 * 13 3 2 30 30 H 1.08999 * 110.48400 * 274.93373 * 16 14 13 31 31 H 1.08997 * 110.48354 * 37.44290 * 16 14 13 32 32 H 1.09002 * 117.46229 * 201.22212 * 19 17 16 33 33 H 1.09002 * 117.46014 * 346.01803 * 19 17 16 34 34 H 1.09001 * 110.48850 * 329.10908 * 22 20 19 35 35 H 1.09004 * 110.48377 * 206.46818 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6086 1.9804 0.8442 5 6 3.5423 1.4442 0.1180 6 1 4.1445 1.8898 -0.6599 7 6 4.1480 0.8768 1.2190 8 7 3.4146 0.3345 2.1665 9 14 6.0103 0.8796 1.3657 10 1 6.5047 2.2798 1.3660 11 1 6.4079 0.2143 2.6323 12 1 6.5984 0.1472 0.2155 13 7 1.6464 2.1010 -1.2528 14 6 1.5428 3.5552 -1.0732 15 1 2.2674 3.9075 -0.3391 16 6 1.7286 4.2898 -2.4242 17 6 1.0151 5.6423 -2.2206 18 1 1.6262 6.5437 -2.2652 19 6 -0.4815 5.7236 -2.5278 20 6 -0.0174 5.4303 -1.0997 21 1 -0.1735 6.1796 -0.3237 22 6 0.1046 3.9563 -0.6612 23 1 -0.3633 -1.0254 -0.0681 24 1 -0.3634 0.4536 0.9221 25 1 -0.3633 0.5716 -0.8540 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8406 -0.0643 2.9413 29 1 2.2877 1.8734 -1.9979 30 1 2.7874 4.4445 -2.6318 31 1 1.2607 3.7271 -3.2319 32 1 -0.9008 6.7097 -2.7275 33 1 -0.9243 4.9023 -3.0911 34 1 -0.6277 3.3409 -1.1838 35 1 -0.0218 3.8677 0.4179 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167909553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:26 Heat of formation + Delta-G solvation = 9.312878 kcal Electronic energy + Delta-G solvation = -14201.715367 eV Core-core repulsion = 12006.543668 eV Total energy + Delta-G solvation = -2195.171699 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14604 -35.78264 -32.57146 -31.22530 -28.59016 -27.83106 -25.80793 -22.81312 -21.39672 -19.82469 -19.57543 -18.97549 -16.50013 -15.96136 -14.95210 -14.45306 -13.54183 -13.35253 -12.99751 -12.69810 -12.57940 -12.02552 -11.48579 -11.34804 -11.12005 -10.93438 -10.80955 -10.71256 -10.59710 -10.30790 -10.01280 -9.78107 -9.59366 -9.51680 -9.22537 -8.97518 -8.35300 -7.23287 -5.97940 -4.11021 3.28524 3.33766 3.36082 3.89933 4.40343 4.77700 5.03005 5.15768 5.26635 5.49786 5.55983 5.63709 5.85291 5.92113 6.06288 6.17659 6.33064 6.33273 6.42476 6.54129 6.55796 6.58204 6.66613 6.75936 6.93130 7.16801 7.21680 7.49803 7.63513 7.80314 8.12568 8.19320 8.38225 8.70980 9.02612 9.56525 11.02062 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.009171 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.948247 B = 3052.451179 C = 3574.540051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.054 0.946 16 C -0.097 4.097 17 C -0.167 4.167 18 H 0.103 0.897 19 C -0.157 4.157 20 C -0.165 4.165 21 H 0.103 0.897 22 C -0.082 4.082 23 H 0.023 0.977 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.089 0.911 28 H 0.262 0.738 29 H 0.328 0.672 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 6.856 -6.233 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.585 4.585 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.312 5.312 14 C -0.019 4.019 15 H 0.072 0.928 16 C -0.135 4.135 17 C -0.185 4.185 18 H 0.121 0.879 19 C -0.194 4.194 20 C -0.183 4.183 21 H 0.121 0.879 22 C -0.120 4.120 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.107 0.893 28 H 0.072 0.928 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.729 6.626 -5.929 10.578 hybrid contribution 2.096 0.327 0.304 2.143 sum -3.634 6.953 -5.625 9.654 Atomic orbital electron populations 1.21712 0.99051 0.98380 1.00374 1.21491 0.92084 0.99323 1.01568 1.19157 0.92599 0.91184 0.86303 0.95016 1.21857 0.92818 1.38155 1.05641 0.92973 1.24934 0.97878 0.95018 0.95697 1.69871 1.34890 1.38158 1.09423 0.86725 0.86152 0.78158 0.77356 1.20437 1.21224 1.20295 1.60907 1.54669 1.05599 1.10010 1.22505 0.95202 0.89490 0.94662 0.92755 1.22127 0.99392 0.93418 0.98600 1.23128 0.90920 0.99102 1.05359 0.87917 1.22997 0.96090 1.02072 0.98226 1.23267 1.04972 0.98861 0.91221 0.87928 1.21947 0.97930 0.91539 1.00577 0.95741 0.94594 0.93139 0.95190 0.89264 0.92847 0.85511 0.91942 0.91179 0.89139 0.89108 0.91089 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.84 37.16 0.37 -2.51 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.33 1.85 -68.86 -0.13 5.20 16 4 H 0.03 0.88 7.84 -51.93 -0.41 0.47 16 5 C -0.55 -14.74 8.37 -34.44 -0.29 -15.03 16 6 H 0.05 1.40 7.72 -52.49 -0.41 0.99 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.13 11.30 55.43 0.63 -24.50 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -14.27 5.51 -98.87 -0.55 -14.82 16 14 C 0.09 1.74 2.96 -65.72 -0.19 1.55 16 15 H 0.05 1.18 7.76 -51.93 -0.40 0.78 16 16 C -0.10 -1.54 6.02 -25.07 -0.15 -1.69 16 17 C -0.17 -2.34 6.94 -89.51 -0.62 -2.96 16 18 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 19 C -0.16 -1.98 10.07 -26.73 -0.27 -2.25 16 20 C -0.16 -2.38 6.94 -89.51 -0.62 -3.00 16 21 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 22 C -0.08 -1.40 6.31 -25.07 -0.16 -1.56 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.05 1.01 7.64 -51.93 -0.40 0.61 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 2.40 5.96 -51.93 -0.31 2.09 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.33 6.80 8.10 -39.29 -0.32 6.49 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -27.16 280.61 -9.04 -36.21 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.03 Total: 5.88 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.31 Total: -23.20 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.08 Total: -39.32 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.16 -9.04 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167909553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.519 kcal (2) G-P(sol) polarization free energy of solvation -27.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds