Wall clock time and date at job start Thu Apr 9 2020 11:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46644 * 2 1 4 4 H 1.08994 * 109.47551 * 55.23728 * 3 2 1 5 5 C 1.50711 * 109.46910 * 175.23557 * 3 2 1 6 6 H 1.07994 * 119.99614 * 119.99748 * 5 3 2 7 7 C 1.37877 * 119.99992 * 300.00111 * 5 3 2 8 8 N 1.31519 * 119.99863 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00017 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47009 * 59.99582 * 9 7 5 11 11 H 1.48496 * 109.46813 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46901 * 299.99935 * 9 7 5 13 13 N 1.46898 * 109.47349 * 295.23183 * 3 2 1 14 14 C 1.46896 * 111.00121 * 153.90050 * 13 3 2 15 15 H 1.08997 * 110.81774 * 32.62028 * 14 13 3 16 16 C 1.54895 * 110.75773 * 155.96317 * 14 13 3 17 17 C 1.54263 * 104.19416 * 156.25595 * 16 14 13 18 18 H 1.08998 * 117.41032 * 116.37268 * 17 16 14 19 19 C 1.52997 * 118.19982 * 272.20690 * 17 16 14 20 20 C 1.52997 * 60.37800 * 93.62087 * 19 17 16 21 21 H 1.08994 * 119.29725 * 111.31142 * 20 19 17 22 22 C 1.54266 * 118.19600 * 266.38457 * 20 19 17 23 23 H 1.09002 * 109.46854 * 176.19968 * 1 2 3 24 24 H 1.08999 * 109.47654 * 296.19610 * 1 2 3 25 25 H 1.09001 * 109.47034 * 56.20584 * 1 2 3 26 26 H 1.08995 * 109.47068 * 239.99840 * 2 1 3 27 27 H 1.08998 * 109.47123 * 119.99493 * 2 1 3 28 28 H 0.96999 * 119.99855 * 180.02562 * 8 7 5 29 29 H 1.00906 * 111.00425 * 277.85722 * 13 3 2 30 30 H 1.08999 * 110.48400 * 274.93373 * 16 14 13 31 31 H 1.08997 * 110.48354 * 37.44290 * 16 14 13 32 32 H 1.09002 * 117.46229 * 201.22212 * 19 17 16 33 33 H 1.09002 * 117.46014 * 346.01803 * 19 17 16 34 34 H 1.09001 * 110.48850 * 329.10908 * 22 20 19 35 35 H 1.09004 * 110.48377 * 206.46818 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6086 1.9804 0.8442 5 6 3.5423 1.4442 0.1180 6 1 4.1445 1.8898 -0.6599 7 6 4.1480 0.8768 1.2190 8 7 3.4146 0.3345 2.1665 9 14 6.0103 0.8796 1.3657 10 1 6.5047 2.2798 1.3660 11 1 6.4079 0.2143 2.6323 12 1 6.5984 0.1472 0.2155 13 7 1.6464 2.1010 -1.2528 14 6 1.5428 3.5552 -1.0732 15 1 2.2674 3.9075 -0.3391 16 6 1.7286 4.2898 -2.4242 17 6 1.0151 5.6423 -2.2206 18 1 1.6262 6.5437 -2.2652 19 6 -0.4815 5.7236 -2.5278 20 6 -0.0174 5.4303 -1.0997 21 1 -0.1735 6.1796 -0.3237 22 6 0.1046 3.9563 -0.6612 23 1 -0.3633 -1.0254 -0.0681 24 1 -0.3634 0.4536 0.9221 25 1 -0.3633 0.5716 -0.8540 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8406 -0.0643 2.9413 29 1 2.2877 1.8734 -1.9979 30 1 2.7874 4.4445 -2.6318 31 1 1.2607 3.7271 -3.2319 32 1 -0.9008 6.7097 -2.7275 33 1 -0.9243 4.9023 -3.0911 34 1 -0.6277 3.3409 -1.1838 35 1 -0.0218 3.8677 0.4179 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167909553.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:26 Heat of formation + Delta-G solvation = -5.651570 kcal Electronic energy + Delta-G solvation = -14202.364274 eV Core-core repulsion = 12006.543668 eV Total energy + Delta-G solvation = -2195.820607 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.43044 -37.58136 -34.42060 -33.05823 -30.19789 -29.13135 -27.73383 -24.69222 -22.61997 -21.51304 -21.05446 -20.39789 -18.57388 -17.15128 -16.82268 -16.19553 -15.31350 -14.93090 -14.69141 -14.11537 -13.93339 -13.55746 -13.32376 -13.13169 -13.02890 -12.61519 -12.40456 -12.16669 -12.02066 -12.00499 -11.69967 -11.48661 -11.28829 -11.02023 -10.89451 -10.48390 -10.41601 -9.06008 -8.06321 -6.29029 1.37749 1.38104 1.45990 2.38840 2.78414 3.12777 3.48975 3.81856 3.94087 4.13347 4.34200 4.36467 4.57886 4.62770 4.72549 4.76948 4.85054 4.92316 4.93580 5.02371 5.08030 5.17551 5.25636 5.29136 5.36410 5.43150 5.47404 5.54967 5.67271 5.79319 6.11278 6.21293 6.41690 6.84087 7.02819 7.42633 8.90084 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033729 B = 0.009171 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.948247 B = 3052.451179 C = 3574.540051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C 0.225 3.775 4 H -0.005 1.005 5 C -0.562 4.562 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.672 5.672 14 C 0.086 3.914 15 H 0.018 0.982 16 C -0.090 4.090 17 C -0.169 4.169 18 H 0.119 0.881 19 C -0.132 4.132 20 C -0.178 4.178 21 H 0.114 0.886 22 C -0.078 4.078 23 H 0.045 0.955 24 H 0.028 0.972 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.262 0.738 29 H 0.330 0.670 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.361 7.872 -7.694 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.013 0.987 5 C -0.601 4.601 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.301 5.301 14 C -0.025 4.025 15 H 0.037 0.963 16 C -0.128 4.128 17 C -0.188 4.188 18 H 0.137 0.863 19 C -0.168 4.168 20 C -0.196 4.196 21 H 0.132 0.868 22 C -0.116 4.116 23 H 0.064 0.936 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.017 7.650 -7.405 12.230 hybrid contribution 2.168 0.016 0.769 2.300 sum -3.849 7.667 -6.636 10.846 Atomic orbital electron populations 1.21566 0.96415 0.99895 1.00372 1.21359 0.94433 0.98406 0.99962 1.18896 0.91378 0.91452 0.86687 0.98654 1.22178 0.94152 1.38039 1.05730 0.93261 1.25689 1.02231 0.94757 0.95451 1.70007 1.36525 1.38700 1.09796 0.85731 0.80934 0.78180 0.77511 1.20129 1.20791 1.19571 1.60867 1.54023 1.06934 1.08260 1.22568 0.95574 0.88324 0.96016 0.96344 1.22028 1.00002 0.94314 0.96473 1.23179 0.91881 0.98485 1.05249 0.86322 1.23108 0.94447 1.03621 0.95674 1.23216 1.06745 0.96940 0.92701 0.86847 1.21828 0.96495 0.93937 0.99346 0.93553 0.95310 0.92214 0.95292 0.92216 0.92868 0.85365 0.91842 0.90425 0.86276 0.88908 0.91170 0.93978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.84 71.98 0.71 -4.46 16 2 C -0.10 -5.05 5.45 30.59 0.17 -4.88 16 3 C 0.22 11.44 1.85 44.17 0.08 11.53 16 4 H 0.00 -0.26 7.84 -2.39 -0.02 -0.28 16 5 C -0.56 -31.02 8.37 25.60 0.21 -30.80 16 6 H 0.05 2.68 7.72 -2.91 -0.02 2.66 16 7 C 0.02 1.04 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.95 11.30 21.45 0.24 -52.71 16 9 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 N -0.67 -28.41 5.51 -466.71 -2.57 -30.99 16 14 C 0.09 3.28 2.96 46.21 0.14 3.41 16 15 H 0.02 0.84 7.76 -2.39 -0.02 0.82 16 16 C -0.09 -2.73 6.02 31.67 0.19 -2.54 16 17 C -0.17 -4.32 6.94 -10.07 -0.07 -4.39 16 18 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 19 C -0.13 -2.84 10.07 30.59 0.31 -2.53 16 20 C -0.18 -4.80 6.94 -10.07 -0.07 -4.87 16 21 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 22 C -0.08 -2.66 6.31 31.67 0.20 -2.46 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 2.33 7.64 -2.39 -0.02 2.32 16 26 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 3.30 5.96 -2.39 -0.01 3.29 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.33 13.68 8.10 -89.69 -0.73 12.96 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -58.83 280.61 2.33 -56.51 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.32 Total: 21.78 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.32 Total: -40.51 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -2.33 Total: -83.70 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -58.83 2.33 -56.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167909553.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.855 kcal (2) G-P(sol) polarization free energy of solvation -58.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds