Wall clock time and date at job start Thu Apr 9 2020 11:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 115.51794 * 2 1 4 4 C 1.52997 * 117.45934 * 214.52164 * 2 1 3 5 5 H 1.09000 * 119.30152 * 141.09802 * 4 2 1 6 6 C 1.54755 * 118.23160 * 346.06714 * 4 2 1 7 7 C 1.54890 * 103.96615 * 272.22846 * 6 4 2 8 8 H 1.09006 * 110.75876 * 156.32394 * 7 6 4 9 9 N 1.46892 * 110.75934 * 279.51815 * 7 6 4 10 10 C 1.46909 * 110.99858 * 271.06074 * 9 7 6 11 11 C 1.50697 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00205 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99901 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99811 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99783 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47331 * 270.00213 * 15 13 11 17 17 H 1.48498 * 109.47115 * 30.00499 * 15 13 11 18 18 H 1.48503 * 109.46650 * 149.99939 * 15 13 11 19 19 C 1.54890 * 102.91466 * 37.92306 * 7 6 4 20 20 C 1.52996 * 117.45728 * 145.47738 * 2 1 3 21 21 H 1.08997 * 119.75353 * 218.71969 * 20 2 1 22 22 H 1.08998 * 109.46883 * 281.28185 * 1 2 3 23 23 H 1.08998 * 109.46664 * 41.27506 * 1 2 3 24 24 H 1.08993 * 109.47048 * 161.27761 * 1 2 3 25 25 H 1.08996 * 109.47117 * 205.48247 * 3 2 1 26 26 H 1.09008 * 109.47101 * 325.47930 * 3 2 1 27 27 H 1.08998 * 109.47593 * 85.47504 * 3 2 1 28 28 H 1.09000 * 110.69664 * 153.57932 * 6 4 2 29 29 H 1.09002 * 110.50637 * 30.78442 * 6 4 2 30 30 H 1.00897 * 111.00238 * 35.01232 * 9 7 6 31 31 H 1.08999 * 109.46726 * 59.99941 * 10 9 7 32 32 H 1.08992 * 109.47227 * 300.00199 * 10 9 7 33 33 H 0.97003 * 119.99344 * 180.02562 * 14 13 11 34 34 H 1.09007 * 110.48911 * 80.64202 * 19 7 6 35 35 H 1.08996 * 110.49241 * 203.15413 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1892 1.3807 0.0000 4 6 2.2356 -1.1185 -0.7694 5 1 3.1380 -0.8892 -1.3361 6 6 1.3989 -2.3426 -1.2128 7 6 1.4701 -3.3033 0.0000 8 1 0.6210 -3.9868 0.0019 9 7 2.7359 -4.0487 0.0001 10 6 2.6138 -5.2934 -0.7707 11 6 3.9289 -6.0289 -0.7486 12 1 4.7711 -5.6136 -0.2149 13 6 4.0568 -7.2326 -1.4087 14 7 3.0312 -7.7386 -2.0581 15 14 5.6868 -8.1447 -1.3806 16 1 6.5179 -7.7087 -2.5315 17 1 6.4001 -7.8448 -0.1132 18 1 5.4381 -9.6057 -1.4749 19 6 1.4011 -2.3389 1.2101 20 6 2.2355 -1.1185 0.7694 21 1 3.1401 -0.8981 1.3362 22 1 -0.3633 0.2010 1.0078 23 1 -0.3632 0.7723 -0.6779 24 1 -0.3633 -0.9732 -0.3298 25 1 3.1829 1.3090 -0.4421 26 1 1.5816 2.0734 -0.5824 27 1 2.2726 1.7436 1.0244 28 1 1.8367 -2.8092 -2.0953 29 1 0.3672 -2.0496 -1.4073 30 1 3.4911 -3.4789 -0.3505 31 1 2.3469 -5.0580 -1.8010 32 1 1.8392 -5.9200 -0.3288 33 1 3.1211 -8.5856 -2.5222 34 1 0.3697 -2.0452 1.4056 35 1 1.8383 -2.8036 2.0938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170711172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:38 Heat of formation + Delta-G solvation = 10.438870 kcal Electronic energy + Delta-G solvation = -13917.908474 eV Core-core repulsion = 11722.785601 eV Total energy + Delta-G solvation = -2195.122873 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.98756 -35.21660 -32.75251 -30.75882 -28.03720 -27.87235 -27.22403 -25.45938 -21.72103 -20.27040 -19.43273 -18.02026 -16.37214 -15.50393 -15.16022 -14.44522 -14.13025 -13.87942 -13.19477 -12.93783 -12.45767 -12.26518 -11.97081 -11.83416 -11.58730 -11.25172 -11.17763 -10.92979 -10.88020 -10.61964 -10.54728 -10.16573 -9.88087 -9.32743 -9.30449 -9.04182 -8.45932 -7.19589 -6.00771 -4.02381 3.33244 3.39148 3.44070 3.77462 4.45089 4.64486 4.91867 4.91908 5.13648 5.34110 5.35642 5.45377 5.56607 5.61852 5.77454 5.83701 5.89543 5.92989 6.00049 6.00856 6.12620 6.13320 6.18270 6.40531 6.50438 6.56123 6.64934 6.68309 7.32142 7.48956 7.83128 8.17939 8.48437 8.69132 9.07637 9.62501 11.10346 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.062325 B = 0.006282 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.147024 B = 4455.988166 C = 4591.473562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.112 4.112 4 C -0.155 4.155 5 H 0.103 0.897 6 C -0.129 4.129 7 C 0.086 3.914 8 H 0.074 0.926 9 N -0.677 5.677 10 C 0.194 3.806 11 C -0.513 4.513 12 H 0.061 0.939 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.273 1.273 18 H -0.287 1.287 19 C -0.088 4.088 20 C -0.148 4.148 21 H 0.104 0.896 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.331 0.669 31 H -0.014 1.014 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 14.760 3.315 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.111 4.111 3 C -0.169 4.169 4 C -0.174 4.174 5 H 0.121 0.879 6 C -0.169 4.169 7 C -0.026 4.026 8 H 0.093 0.907 9 N -0.307 5.307 10 C 0.067 3.933 11 C -0.552 4.552 12 H 0.079 0.921 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.213 1.213 19 C -0.126 4.126 20 C -0.166 4.166 21 H 0.122 0.878 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.004 0.996 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.191 14.256 3.821 15.343 hybrid contribution 0.936 -0.251 -1.075 1.448 sum -3.255 14.005 2.745 14.638 Atomic orbital electron populations 1.21414 0.92890 1.02271 1.01265 1.21607 0.94591 0.90814 1.04137 1.21286 0.99942 0.94171 1.01492 1.23493 1.01182 0.97548 0.95135 0.87941 1.22835 0.99293 0.94795 0.99931 1.22625 0.94676 0.93593 0.91670 0.90747 1.60636 1.03268 1.07423 1.59338 1.19571 0.97587 0.85731 0.90414 1.21206 0.97240 1.05128 1.31606 0.92055 1.24988 0.96809 0.97402 0.95382 1.69967 1.30112 1.19638 1.34104 0.86496 0.83705 0.78797 0.78394 1.20765 1.19785 1.21252 1.22043 0.98400 0.93121 0.99004 1.23332 1.01289 0.97378 0.94643 0.87792 0.92531 0.92785 0.91482 0.92583 0.92436 0.92414 0.91237 0.91453 0.85232 0.99639 0.95556 0.92964 0.91916 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 8.45 37.16 0.31 -1.05 16 2 C -0.11 -1.37 2.68 -154.51 -0.41 -1.79 16 3 C -0.11 -1.16 9.84 37.16 0.37 -0.80 16 4 C -0.16 -2.25 6.09 -89.24 -0.54 -2.79 16 5 H 0.10 1.48 8.13 -51.93 -0.42 1.06 16 6 C -0.13 -2.09 5.76 -24.81 -0.14 -2.23 16 7 C 0.09 1.55 3.26 -65.72 -0.21 1.34 16 8 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 9 N -0.68 -14.80 6.33 -105.89 -0.67 -15.48 16 10 C 0.19 5.15 5.31 -4.97 -0.03 5.13 16 11 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 12 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 15 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 C -0.09 -1.33 5.94 -25.07 -0.15 -1.48 16 20 C -0.15 -2.08 6.61 -89.50 -0.59 -2.68 16 21 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.54 8.04 -51.93 -0.42 0.13 16 24 H 0.07 0.80 4.98 -51.93 -0.26 0.54 16 25 H 0.06 0.58 7.96 -51.93 -0.41 0.17 16 26 H 0.06 0.54 8.01 -51.92 -0.42 0.12 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.25 7.86 -51.93 -0.41 0.85 16 29 H 0.07 0.99 5.99 -51.93 -0.31 0.68 16 30 H 0.33 7.08 8.07 -39.29 -0.32 6.76 16 31 H -0.01 -0.40 7.86 -51.93 -0.41 -0.81 16 32 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.06 0.85 6.79 -51.93 -0.35 0.50 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 277.50 15.07 4.18 4.18 Total: -1.00 -29.58 277.50 -8.38 -37.96 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.79 Total: 2.81 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: -1.82 Total: -19.97 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.07 Total: -41.92 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.58 -8.38 -37.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170711172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.396 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds