Wall clock time and date at job start Thu Apr 9 2020 11:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 115.51794 * 2 1 4 4 C 1.52997 * 117.45934 * 214.52164 * 2 1 3 5 5 H 1.09000 * 119.30152 * 141.09802 * 4 2 1 6 6 C 1.54755 * 118.23160 * 346.06714 * 4 2 1 7 7 C 1.54890 * 103.96615 * 272.22846 * 6 4 2 8 8 H 1.09006 * 110.75876 * 156.32394 * 7 6 4 9 9 N 1.46892 * 110.75934 * 279.51815 * 7 6 4 10 10 C 1.46909 * 110.99858 * 271.06074 * 9 7 6 11 11 C 1.50697 * 109.46993 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00205 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99901 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99811 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99783 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47331 * 270.00213 * 15 13 11 17 17 H 1.48498 * 109.47115 * 30.00499 * 15 13 11 18 18 H 1.48503 * 109.46650 * 149.99939 * 15 13 11 19 19 C 1.54890 * 102.91466 * 37.92306 * 7 6 4 20 20 C 1.52996 * 117.45728 * 145.47738 * 2 1 3 21 21 H 1.08997 * 119.75353 * 218.71969 * 20 2 1 22 22 H 1.08998 * 109.46883 * 281.28185 * 1 2 3 23 23 H 1.08998 * 109.46664 * 41.27506 * 1 2 3 24 24 H 1.08993 * 109.47048 * 161.27761 * 1 2 3 25 25 H 1.08996 * 109.47117 * 205.48247 * 3 2 1 26 26 H 1.09008 * 109.47101 * 325.47930 * 3 2 1 27 27 H 1.08998 * 109.47593 * 85.47504 * 3 2 1 28 28 H 1.09000 * 110.69664 * 153.57932 * 6 4 2 29 29 H 1.09002 * 110.50637 * 30.78442 * 6 4 2 30 30 H 1.00897 * 111.00238 * 35.01232 * 9 7 6 31 31 H 1.08999 * 109.46726 * 59.99941 * 10 9 7 32 32 H 1.08992 * 109.47227 * 300.00199 * 10 9 7 33 33 H 0.97003 * 119.99344 * 180.02562 * 14 13 11 34 34 H 1.09007 * 110.48911 * 80.64202 * 19 7 6 35 35 H 1.08996 * 110.49241 * 203.15413 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1892 1.3807 0.0000 4 6 2.2356 -1.1185 -0.7694 5 1 3.1380 -0.8892 -1.3361 6 6 1.3989 -2.3426 -1.2128 7 6 1.4701 -3.3033 0.0000 8 1 0.6210 -3.9868 0.0019 9 7 2.7359 -4.0487 0.0001 10 6 2.6138 -5.2934 -0.7707 11 6 3.9289 -6.0289 -0.7486 12 1 4.7711 -5.6136 -0.2149 13 6 4.0568 -7.2326 -1.4087 14 7 3.0312 -7.7386 -2.0581 15 14 5.6868 -8.1447 -1.3806 16 1 6.5179 -7.7087 -2.5315 17 1 6.4001 -7.8448 -0.1132 18 1 5.4381 -9.6057 -1.4749 19 6 1.4011 -2.3389 1.2101 20 6 2.2355 -1.1185 0.7694 21 1 3.1401 -0.8981 1.3362 22 1 -0.3633 0.2010 1.0078 23 1 -0.3632 0.7723 -0.6779 24 1 -0.3633 -0.9732 -0.3298 25 1 3.1829 1.3090 -0.4421 26 1 1.5816 2.0734 -0.5824 27 1 2.2726 1.7436 1.0244 28 1 1.8367 -2.8092 -2.0953 29 1 0.3672 -2.0496 -1.4073 30 1 3.4911 -3.4789 -0.3505 31 1 2.3469 -5.0580 -1.8010 32 1 1.8392 -5.9200 -0.3288 33 1 3.1211 -8.5856 -2.5222 34 1 0.3697 -2.0452 1.4056 35 1 1.8383 -2.8036 2.0938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170711172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:37 Heat of formation + Delta-G solvation = -7.577983 kcal Electronic energy + Delta-G solvation = -13918.689743 eV Core-core repulsion = 11722.785601 eV Total energy + Delta-G solvation = -2195.904142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19434 -36.88198 -34.74856 -32.32809 -29.20793 -29.13585 -28.50666 -27.16664 -23.81505 -21.68436 -20.62241 -19.15866 -18.50473 -16.90220 -16.70956 -16.13232 -15.66108 -15.02436 -14.71117 -14.51289 -13.81514 -13.62637 -13.37269 -13.00595 -12.90093 -12.89033 -12.65507 -12.45186 -12.29684 -12.19954 -12.06229 -11.86482 -11.41316 -11.28768 -10.68608 -10.38710 -10.33126 -9.04438 -8.23480 -6.34958 1.39915 1.41937 1.53861 2.39256 2.67781 3.09563 3.46166 3.64546 3.78383 3.91683 4.22355 4.27123 4.37309 4.56993 4.59123 4.67901 4.80692 4.84827 4.87431 4.95088 5.05808 5.09022 5.10815 5.16045 5.25084 5.27577 5.34840 5.39219 5.41877 5.59351 5.63585 6.03309 6.49475 6.75151 6.90636 7.36269 8.88147 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.062325 B = 0.006282 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.147024 B = 4455.988166 C = 4591.473562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.171 4.171 5 H 0.101 0.899 6 C -0.122 4.122 7 C 0.076 3.924 8 H 0.059 0.941 9 N -0.675 5.675 10 C 0.211 3.789 11 C -0.537 4.537 12 H 0.062 0.938 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.271 1.271 17 H -0.265 1.265 18 H -0.280 1.280 19 C -0.077 4.077 20 C -0.154 4.154 21 H 0.108 0.892 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.333 0.667 31 H -0.040 1.040 32 H -0.003 1.003 33 H 0.265 0.735 34 H 0.083 0.917 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 16.292 3.939 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.088 4.088 3 C -0.169 4.169 4 C -0.189 4.189 5 H 0.119 0.881 6 C -0.160 4.160 7 C -0.035 4.035 8 H 0.077 0.923 9 N -0.304 5.304 10 C 0.083 3.917 11 C -0.575 4.575 12 H 0.081 0.919 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.798 3.202 16 H -0.196 1.196 17 H -0.189 1.189 18 H -0.206 1.206 19 C -0.115 4.115 20 C -0.172 4.172 21 H 0.126 0.874 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.151 0.849 31 H -0.023 1.023 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.655 15.817 4.454 16.834 hybrid contribution 0.698 -0.701 -1.270 1.610 sum -2.957 15.116 3.183 15.728 Atomic orbital electron populations 1.21471 0.91833 1.02299 1.02533 1.21765 0.95373 0.90962 1.00666 1.21332 0.99973 0.92959 1.02626 1.23443 1.01624 0.98432 0.95392 0.88129 1.22672 1.00556 0.95055 0.97763 1.22762 0.92223 0.93992 0.94526 0.92310 1.60549 1.05265 1.06611 1.58012 1.19190 0.96026 0.87362 0.89150 1.21555 0.97931 1.05963 1.32078 0.91945 1.25969 1.00906 0.98236 0.94587 1.70097 1.32509 1.20186 1.34666 0.85312 0.78668 0.77296 0.78887 1.19646 1.18910 1.20570 1.21919 0.99941 0.92747 0.96911 1.23338 1.01781 0.98087 0.94013 0.87433 0.91181 0.91176 0.92523 0.92699 0.90917 0.91166 0.93959 0.89774 0.84933 1.02282 0.98499 0.92596 0.89838 0.91536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.45 71.99 0.61 -1.81 16 2 C -0.09 -1.93 2.68 -52.18 -0.14 -2.07 16 3 C -0.11 -1.95 9.84 71.98 0.71 -1.25 16 4 C -0.17 -4.76 6.09 -9.90 -0.06 -4.82 16 5 H 0.10 2.84 8.13 -2.39 -0.02 2.82 16 6 C -0.12 -3.96 5.76 31.84 0.18 -3.78 16 7 C 0.08 2.79 3.26 46.21 0.15 2.94 16 8 H 0.06 2.32 7.86 -2.38 -0.02 2.30 16 9 N -0.67 -30.41 6.33 -488.92 -3.10 -33.50 16 10 C 0.21 11.72 5.31 85.55 0.45 12.17 16 11 C -0.54 -31.61 9.32 25.60 0.24 -31.37 16 12 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 13 C 0.00 0.07 5.46 84.66 0.46 0.53 16 14 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 15 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 C -0.08 -2.28 5.94 31.67 0.19 -2.09 16 20 C -0.15 -4.07 6.61 -10.07 -0.07 -4.14 16 21 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 22 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 24 H 0.06 1.22 4.98 -2.39 -0.01 1.21 16 25 H 0.05 0.98 7.96 -2.39 -0.02 0.96 16 26 H 0.07 1.08 8.01 -2.38 -0.02 1.06 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.59 7.86 -2.39 -0.02 1.57 16 29 H 0.08 2.43 5.99 -2.39 -0.01 2.42 16 30 H 0.33 14.63 8.07 -89.70 -0.72 13.90 16 31 H -0.04 -2.42 7.86 -2.39 -0.02 -2.43 16 32 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 33 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.08 2.12 6.79 -2.38 -0.02 2.10 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -64.02 277.50 2.27 -61.75 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.33 Total: 17.63 kcal Atomic # 6 Polarization: -38.42 SS G_CDS: 2.73 Total: -35.69 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -2.81 Total: -90.83 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.02 2.27 -61.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170711172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.171 kcal (2) G-P(sol) polarization free energy of solvation -64.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds