Wall clock time and date at job start Thu Apr 9 2020 11:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.43165 * 2 1 4 4 C 1.54893 * 110.59970 * 122.62094 * 2 1 3 5 5 C 1.54888 * 102.74780 * 156.68000 * 4 2 1 6 6 C 1.54266 * 104.19371 * 322.05602 * 5 4 2 7 7 H 1.09004 * 110.03309 * 264.32535 * 6 5 4 8 8 C 1.52998 * 110.07332 * 142.91957 * 6 5 4 9 9 C 1.53876 * 106.60142 * 23.61006 * 6 5 4 10 10 N 1.46905 * 110.03089 * 119.28069 * 9 6 5 11 11 C 1.46901 * 110.99832 * 154.88990 * 10 9 6 12 12 C 1.53000 * 109.46777 * 185.75141 * 11 10 9 13 13 C 1.50707 * 109.46725 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99816 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99804 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00007 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 120.00129 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46947 * 90.00308 * 17 15 13 19 19 H 1.48500 * 109.46928 * 209.99847 * 17 15 13 20 20 H 1.48492 * 109.47264 * 330.00037 * 17 15 13 21 21 H 1.08999 * 109.46498 * 180.69832 * 1 2 3 22 22 H 1.08994 * 109.47206 * 300.69416 * 1 2 3 23 23 H 1.08996 * 109.46831 * 60.69881 * 1 2 3 24 24 H 1.09007 * 110.75467 * 274.99316 * 4 2 1 25 25 H 1.09003 * 110.75349 * 38.36041 * 4 2 1 26 26 H 1.08995 * 110.48554 * 203.38165 * 5 4 2 27 27 H 1.08995 * 110.60125 * 80.78770 * 5 4 2 28 28 H 1.09003 * 109.47381 * 307.17162 * 8 6 5 29 29 H 1.09003 * 109.47113 * 67.17084 * 8 6 5 30 30 H 1.08996 * 109.47682 * 187.17002 * 8 6 5 31 31 H 1.08996 * 110.07267 * 240.69501 * 9 6 5 32 32 H 1.00891 * 111.00378 * 278.85093 * 10 9 6 33 33 H 1.09002 * 109.47246 * 305.74885 * 11 10 9 34 34 H 1.08997 * 109.46987 * 65.75243 * 11 10 9 35 35 H 1.09000 * 109.47276 * 299.99404 * 12 11 10 36 36 H 1.08997 * 109.47279 * 60.00280 * 12 11 10 37 37 H 0.96995 * 120.00401 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0750 -0.7816 1.2212 5 6 3.4939 -1.1946 0.7571 6 6 3.3186 -1.5368 -0.7368 7 1 3.1731 -2.6101 -0.8595 8 6 4.5466 -1.0810 -1.5275 9 6 2.0699 -0.7773 -1.2183 10 7 2.4326 0.1581 -2.2914 11 6 1.2782 0.4424 -3.1543 12 6 1.7259 1.3020 -4.3382 13 6 0.5414 1.5941 -5.2231 14 1 -0.4332 1.2059 -4.9664 15 6 0.7019 2.3579 -6.3597 16 7 -0.3318 2.6133 -7.1316 17 14 2.3872 3.0311 -6.8024 18 1 3.1018 2.0517 -7.6600 19 1 2.2310 4.3117 -7.5379 20 1 3.1684 3.2651 -5.5614 21 1 -0.3632 -1.0276 0.0125 22 1 -0.3633 0.5245 0.8836 23 1 -0.3633 0.5029 -0.8962 24 1 2.1279 -0.1381 2.0994 25 1 1.4628 -1.6609 1.4215 26 1 3.8370 -2.0685 1.3109 27 1 4.1933 -0.3677 0.8796 28 1 4.7440 -0.0297 -1.3181 29 1 5.4099 -1.6783 -1.2341 30 1 4.3608 -1.2103 -2.5937 31 1 1.3182 -1.4813 -1.5750 32 1 2.8199 1.0096 -1.9135 33 1 0.8606 -0.4946 -3.5230 34 1 0.5203 0.9779 -2.5825 35 1 2.1434 2.2389 -3.9696 36 1 2.4837 0.7665 -4.9100 37 1 -0.2189 3.1503 -7.9314 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379378114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:51 Heat of formation + Delta-G solvation = -28.158034 kcal Electronic energy + Delta-G solvation = -14466.447096 eV Core-core repulsion = 12242.339058 eV Total energy + Delta-G solvation = -2224.108039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.22648 -34.78626 -32.56120 -32.42614 -29.99757 -28.23257 -25.61571 -23.95640 -23.12423 -20.55944 -20.17853 -18.87595 -16.76731 -15.62504 -15.48507 -14.58719 -14.15611 -13.53807 -13.48975 -13.26098 -12.73652 -12.52590 -12.50311 -12.31360 -11.57111 -11.43758 -11.31450 -10.96899 -10.71405 -10.64738 -10.54433 -10.48472 -10.26530 -10.06110 -9.75247 -9.59054 -9.18672 -8.50780 -7.73853 -6.01760 -3.99702 3.34926 3.41542 3.46884 4.48852 4.55454 4.64836 4.73569 5.04589 5.26002 5.33103 5.42186 5.53187 5.58365 5.59893 5.68199 5.78001 5.86594 5.97441 6.00528 6.07066 6.12174 6.21765 6.27679 6.33171 6.43087 6.48003 6.53586 6.74328 6.86075 7.22334 7.44584 7.69581 7.82838 7.98724 8.56547 9.02623 9.61079 11.11704 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.042621 B = 0.007061 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.802477 B = 3964.712308 C = 4417.367146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 H 0.072 0.928 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.088 4.088 7 H 0.066 0.934 8 C -0.124 4.124 9 C 0.089 3.911 10 N -0.683 5.683 11 C 0.072 3.928 12 C -0.009 4.009 13 C -0.520 4.520 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.053 0.947 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.334 0.666 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.012 0.988 36 H 0.020 0.980 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -6.644 15.621 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 H 0.090 0.910 4 C -0.156 4.156 5 C -0.159 4.159 6 C -0.108 4.108 7 H 0.084 0.916 8 C -0.181 4.181 9 C -0.021 4.021 10 N -0.312 5.312 11 C -0.056 4.056 12 C -0.047 4.047 13 C -0.558 4.558 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.190 1.190 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.152 0.848 33 H 0.079 0.921 34 H 0.041 0.959 35 H 0.030 0.970 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.060 -7.040 15.012 18.022 hybrid contribution 0.162 1.014 0.230 1.053 sum 7.221 -6.026 15.243 17.911 Atomic orbital electron populations 1.21867 0.94992 1.01638 1.01909 1.22756 0.95970 0.99454 0.96265 0.90982 1.22495 0.96358 0.99564 0.97184 1.22469 0.96806 1.00686 0.95950 1.21767 0.95871 0.99166 0.93955 0.91562 1.21552 0.94987 1.00083 1.01526 1.22299 0.95511 0.94725 0.89613 1.60779 1.32499 1.17327 1.20588 1.22007 0.90180 0.99440 0.93962 1.19528 0.97311 0.94451 0.93370 1.21099 0.95360 1.32350 1.07039 0.91212 1.25010 0.96668 0.95763 0.96032 1.69917 1.30069 1.39551 1.14907 0.86730 0.84984 0.78418 0.78850 1.20286 1.21566 1.18978 0.92808 0.93129 0.91976 0.92138 0.91660 0.92233 0.91743 0.93138 0.94685 0.91036 0.90558 0.84776 0.92070 0.95891 0.96976 0.96214 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.12 37.16 0.34 -1.50 16 2 C -0.12 -1.55 3.08 -88.96 -0.27 -1.82 16 3 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 4 C -0.12 -1.24 6.33 -24.74 -0.16 -1.40 16 5 C -0.12 -1.28 6.36 -25.07 -0.16 -1.44 16 6 C -0.09 -1.08 3.50 -89.50 -0.31 -1.40 16 7 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 8 C -0.12 -1.58 8.12 37.16 0.30 -1.28 16 9 C 0.09 1.25 2.78 -66.59 -0.19 1.06 16 10 N -0.68 -11.34 4.32 -105.54 -0.46 -11.79 16 11 C 0.07 1.46 5.51 -3.82 -0.02 1.44 16 12 C -0.01 -0.21 4.35 -27.88 -0.12 -0.33 16 13 C -0.52 -15.07 9.66 -34.44 -0.33 -15.40 16 14 H 0.07 2.16 7.99 -52.48 -0.42 1.75 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 17 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.89 6.49 -51.93 -0.34 0.56 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.68 7.77 -51.93 -0.40 0.27 16 28 H 0.05 0.65 7.63 -51.93 -0.40 0.25 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.05 7.61 -51.93 -0.40 0.66 16 31 H 0.08 1.14 7.41 -51.93 -0.38 0.75 16 32 H 0.33 5.37 7.85 -39.30 -0.31 5.06 16 33 H 0.06 1.28 7.92 -51.93 -0.41 0.86 16 34 H 0.02 0.47 6.49 -51.93 -0.34 0.13 16 35 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 36 H 0.02 0.49 7.57 -51.93 -0.39 0.09 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 285.50 15.07 4.30 4.30 Total: -1.00 -29.85 285.50 -7.74 -37.59 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.67 Total: 0.09 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.02 Total: -20.20 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.32 Total: -39.33 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.85 -7.74 -37.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379378114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.435 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds