Wall clock time and date at job start Thu Apr 9 2020 11:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46719 * 2 1 4 4 H 1.09003 * 109.47174 * 302.89815 * 3 2 1 5 5 C 1.50704 * 109.46896 * 182.90043 * 3 2 1 6 6 H 1.07994 * 119.99777 * 240.00347 * 5 3 2 7 7 C 1.37886 * 119.99754 * 59.99589 * 5 3 2 8 8 N 1.31512 * 119.99268 * 180.02562 * 7 5 3 9 9 Si 1.86789 * 120.00205 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47026 * 269.99393 * 9 7 5 11 11 H 1.48503 * 109.47367 * 29.99660 * 9 7 5 12 12 H 1.48500 * 109.47208 * 149.99590 * 9 7 5 13 13 N 1.46900 * 109.47199 * 62.90193 * 3 2 1 14 14 C 1.46900 * 110.99824 * 191.88846 * 13 3 2 15 15 C 1.46896 * 110.99742 * 67.93501 * 13 3 2 16 16 C 1.53009 * 109.46823 * 196.41114 * 15 13 3 17 17 C 1.53003 * 109.47055 * 179.97438 * 16 15 13 18 18 C 1.52996 * 117.49743 * 243.62268 * 17 16 15 19 19 C 1.52997 * 117.49530 * 175.00218 * 17 16 15 20 20 H 1.08998 * 109.46521 * 174.97036 * 1 2 3 21 21 H 1.08995 * 109.46974 * 294.96625 * 1 2 3 22 22 H 1.08997 * 109.46979 * 54.97126 * 1 2 3 23 23 H 1.09007 * 109.46804 * 240.00095 * 2 1 3 24 24 H 1.08999 * 109.47074 * 120.00207 * 2 1 3 25 25 H 0.97008 * 119.99562 * 180.02562 * 8 7 5 26 26 H 1.09001 * 109.47014 * 60.00028 * 14 13 3 27 27 H 1.09003 * 109.46829 * 180.02562 * 14 13 3 28 28 H 1.08997 * 109.47125 * 299.99732 * 14 13 3 29 29 H 1.09004 * 109.47677 * 316.40530 * 15 13 3 30 30 H 1.08997 * 109.47837 * 76.41343 * 15 13 3 31 31 H 1.08997 * 109.47126 * 299.99887 * 16 15 13 32 32 H 1.09005 * 109.46718 * 59.99887 * 16 15 13 33 33 H 1.08994 * 115.54741 * 29.33306 * 17 16 15 34 34 H 1.09005 * 117.50217 * 359.97438 * 18 17 16 35 35 H 1.09003 * 117.49981 * 145.02579 * 18 17 16 36 36 H 1.08998 * 117.49785 * 214.97977 * 19 17 16 37 37 H 1.08996 * 117.50277 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6348 1.9712 -0.8629 5 6 3.5453 1.4432 -0.0719 6 1 4.1234 1.8973 0.7192 7 6 4.1843 0.8639 -1.1477 8 7 5.4980 0.8641 -1.2101 9 14 3.1843 0.0789 -2.5162 10 1 2.9518 -1.3534 -2.2003 11 1 1.8793 0.7770 -2.6387 12 1 3.9267 0.1891 -3.7975 13 7 1.6084 2.1145 1.2329 14 6 1.8304 3.5641 1.1478 15 6 2.2849 1.5463 2.4066 16 6 1.5383 1.9613 3.6761 17 6 2.2425 1.3690 4.8985 18 6 1.4639 0.3563 5.7405 19 6 1.7154 1.7663 6.2787 20 1 -0.3632 -1.0237 -0.0901 21 1 -0.3633 0.4337 0.9316 22 1 -0.3633 0.5899 -0.8415 23 1 1.8934 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 5.9476 0.4568 -1.9671 26 1 1.2620 3.9702 0.3111 27 1 1.5026 4.0368 2.0737 28 1 2.8916 3.7609 0.9957 29 1 2.2942 0.4590 2.3297 30 1 3.3092 1.9163 2.4502 31 1 1.5289 3.0485 3.7531 32 1 0.5139 1.5912 3.6325 33 1 3.3168 1.2174 4.7944 34 1 0.4497 0.1124 5.4240 35 1 2.0259 -0.4619 6.1907 36 1 2.4430 1.8756 7.0829 37 1 0.8668 2.4492 6.3160 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379379371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:52 Heat of formation + Delta-G solvation = 2.414654 kcal Electronic energy + Delta-G solvation = -14716.294829 eV Core-core repulsion = 12493.512521 eV Total energy + Delta-G solvation = -2222.782307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.56674 -38.05692 -34.82457 -33.72180 -31.15910 -29.04894 -26.56659 -24.56765 -23.29454 -23.12105 -21.25789 -20.87772 -18.70123 -17.34084 -16.52212 -16.14174 -15.75078 -15.45867 -14.97436 -14.59686 -14.32941 -13.76151 -13.69571 -13.39398 -12.96339 -12.72964 -12.55909 -12.38897 -12.31914 -12.13562 -11.97206 -11.89143 -11.41290 -11.38119 -11.17169 -10.95590 -10.70115 -10.58819 -8.93086 -8.32917 -6.36909 1.28827 1.33990 1.44739 2.29646 2.96326 3.02726 3.30716 3.96872 4.08002 4.11877 4.29592 4.36677 4.45168 4.47319 4.64437 4.69006 4.80919 4.82665 4.85691 4.95342 5.01071 5.07567 5.11070 5.15743 5.23202 5.29740 5.31760 5.35315 5.46732 5.48403 5.53443 5.64714 6.15615 6.38953 6.52329 6.71748 7.31440 8.83684 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034793 B = 0.008687 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.562174 B = 3222.604081 C = 3399.827874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.121 4.121 3 C 0.182 3.818 4 H 0.030 0.970 5 C -0.539 4.539 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.949 5.949 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.245 1.245 12 H -0.301 1.301 13 N -0.523 5.523 14 C 0.033 3.967 15 C 0.074 3.926 16 C -0.068 4.068 17 C -0.172 4.172 18 C -0.176 4.176 19 C -0.168 4.168 20 H 0.056 0.944 21 H 0.068 0.932 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.054 0.946 25 H 0.264 0.736 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.001 0.999 29 H 0.058 0.942 30 H 0.003 0.997 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.324 0.184 9.393 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.073 3.927 4 H 0.048 0.952 5 C -0.578 4.578 6 H 0.053 0.947 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.169 1.169 12 H -0.229 1.229 13 N -0.245 5.245 14 C -0.116 4.116 15 C -0.055 4.055 16 C -0.106 4.106 17 C -0.191 4.191 18 C -0.213 4.213 19 C -0.205 4.205 20 H 0.075 0.925 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.019 0.981 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.704 0.068 9.351 14.981 hybrid contribution 1.586 -0.230 -1.014 1.896 sum -10.118 -0.162 8.338 13.111 Atomic orbital electron populations 1.21615 0.94101 1.00878 1.02299 1.21843 0.96923 0.97430 0.99687 1.19644 0.91204 0.92151 0.89661 0.95189 1.21935 0.92800 1.36711 1.06363 0.94710 1.25853 0.95605 0.96316 1.00614 1.70072 1.09747 1.46869 1.32241 0.85845 0.79430 0.79599 0.77546 1.19316 1.16865 1.22862 1.62415 1.55865 1.03464 1.02771 1.22270 0.98224 0.89091 1.02018 1.21859 0.94271 0.99089 0.90245 1.21050 0.98796 1.00012 0.90762 1.22257 0.98869 1.05428 0.92527 1.23090 1.01544 0.93091 1.03599 1.23016 1.03559 0.98202 0.95742 0.92538 0.91287 0.93550 0.94855 0.92773 0.92683 0.91767 0.90217 0.98059 0.92380 0.97867 0.91795 0.90810 0.89576 0.88189 0.88539 0.88137 0.87928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.72 71.98 0.70 -3.71 16 2 C -0.12 -5.11 4.85 30.60 0.15 -4.96 16 3 C 0.18 8.48 1.31 44.17 0.06 8.54 16 4 H 0.03 1.45 7.09 -2.39 -0.02 1.43 16 5 C -0.54 -30.64 7.79 25.60 0.20 -30.44 16 6 H 0.03 2.22 6.25 -2.91 -0.02 2.20 16 7 C 0.01 0.81 5.45 84.66 0.46 1.27 16 8 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 9 Si 0.95 45.50 24.40 68.60 1.67 47.18 16 10 H -0.27 -12.24 6.84 99.48 0.68 -11.56 16 11 H -0.24 -10.88 6.53 99.48 0.65 -10.24 16 12 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 13 N -0.52 -21.02 4.10 -901.44 -3.70 -24.72 16 14 C 0.03 1.22 9.22 127.69 1.18 2.40 16 15 C 0.07 2.87 3.98 86.31 0.34 3.22 16 16 C -0.07 -2.03 5.55 30.60 0.17 -1.86 16 17 C -0.17 -4.61 5.74 -10.79 -0.06 -4.67 16 18 C -0.18 -3.89 10.18 30.59 0.31 -3.57 16 19 C -0.17 -3.49 10.25 30.59 0.31 -3.17 16 20 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.07 2.19 7.84 -2.39 -0.02 2.17 16 22 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.03 1.48 3.23 -2.38 -0.01 1.47 16 24 H 0.05 2.31 6.25 -2.39 -0.01 2.30 16 25 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 26 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 27 H 0.08 2.47 6.59 -2.39 -0.02 2.45 16 28 H 0.00 0.03 7.28 -2.39 -0.02 0.01 16 29 H 0.06 2.40 6.00 -2.39 -0.01 2.38 16 30 H 0.00 0.14 6.68 -2.39 -0.02 0.12 16 31 H 0.06 1.81 6.71 -2.39 -0.02 1.80 16 32 H 0.07 2.05 7.87 -2.38 -0.02 2.03 16 33 H 0.09 2.57 8.07 -2.39 -0.02 2.56 16 34 H 0.10 2.06 8.03 -2.38 -0.02 2.05 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -63.83 282.00 3.03 -60.80 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.94 Total: 13.39 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.82 Total: -36.97 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -3.40 Total: -84.40 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.67 Total: 47.18 kcal Total: -63.83 3.03 -60.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379379371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.216 kcal (2) G-P(sol) polarization free energy of solvation -63.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds