Wall clock time and date at job start Thu Apr 9 2020 11:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53011 * 109.47073 * 2 1 4 4 H 1.08997 * 109.47121 * 177.14060 * 3 2 1 5 5 C 1.50704 * 109.46779 * 297.14534 * 3 2 1 6 6 H 1.07993 * 119.99859 * 120.00202 * 5 3 2 7 7 C 1.37878 * 119.99628 * 299.99619 * 5 3 2 8 8 N 1.31513 * 120.00452 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99614 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47287 * 89.99940 * 9 7 5 11 11 H 1.48504 * 109.47134 * 209.99889 * 9 7 5 12 12 H 1.48504 * 109.47286 * 329.99855 * 9 7 5 13 13 N 1.46896 * 109.46856 * 57.14265 * 3 2 1 14 14 C 1.46904 * 110.99950 * 185.59384 * 13 3 2 15 15 C 1.46894 * 111.00150 * 61.64014 * 13 3 2 16 16 C 1.53000 * 109.47157 * 194.42363 * 15 13 3 17 17 C 1.53004 * 109.47219 * 180.02562 * 16 15 13 18 18 C 1.52994 * 117.50249 * 243.62182 * 17 16 15 19 19 C 1.52994 * 117.49953 * 174.99630 * 17 16 15 20 20 H 1.09009 * 109.46954 * 295.39360 * 1 2 3 21 21 H 1.08993 * 109.47866 * 55.39310 * 1 2 3 22 22 H 1.08999 * 109.47153 * 175.40216 * 1 2 3 23 23 H 1.09004 * 109.47238 * 240.00661 * 2 1 3 24 24 H 1.09002 * 109.47548 * 119.99935 * 2 1 3 25 25 H 0.97001 * 120.00045 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.46678 * 59.99976 * 14 13 3 27 27 H 1.09003 * 109.46935 * 300.00103 * 14 13 3 28 28 H 1.08999 * 109.47494 * 180.02562 * 14 13 3 29 29 H 1.09002 * 109.47497 * 314.42471 * 15 13 3 30 30 H 1.09003 * 109.47155 * 74.42633 * 15 13 3 31 31 H 1.09006 * 109.47340 * 299.99751 * 16 15 13 32 32 H 1.08995 * 109.47435 * 60.00324 * 16 15 13 33 33 H 1.09004 * 115.54902 * 29.32983 * 17 16 15 34 34 H 1.09005 * 117.49824 * 0.02562 * 18 17 16 35 35 H 1.08998 * 117.50321 * 145.01393 * 18 17 16 36 36 H 1.09000 * 117.50112 * 214.97971 * 19 17 16 37 37 H 1.08998 * 117.50218 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1287 1.4430 0.0513 5 6 1.5962 2.1322 -1.2644 6 1 0.9717 3.0116 -1.2091 7 6 1.9876 1.6405 -2.4916 8 7 2.7478 0.5695 -2.5588 9 14 1.4381 2.4957 -4.0588 10 1 2.4350 3.5307 -4.4336 11 1 1.3247 1.4985 -5.1532 12 1 0.1179 3.1380 -3.8355 13 7 1.4947 2.1547 1.1634 14 6 1.8551 3.5783 1.1257 15 6 1.9393 1.5322 2.4175 16 6 1.0874 2.0545 3.5761 17 6 1.5509 1.4066 4.8824 18 6 0.5549 0.5073 5.6172 19 6 0.8986 1.8879 6.1800 20 1 -0.3633 0.4407 0.9285 21 1 -0.3634 0.5836 -0.8457 22 1 -0.3633 -1.0243 -0.0824 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8900 25 1 3.0229 0.2234 -3.4222 26 1 1.4533 4.0308 0.2191 27 1 2.9405 3.6786 1.1316 28 1 1.4393 4.0817 1.9985 29 1 1.8297 0.4501 2.3449 30 1 2.9857 1.7803 2.5953 31 1 1.1971 3.1366 3.6488 32 1 0.0410 1.8064 3.3984 33 1 2.6042 1.1288 4.9216 34 1 -0.4305 0.3767 5.1698 35 1 0.9528 -0.3626 6.1398 36 1 1.5225 1.9263 7.0729 37 1 0.1389 2.6657 6.1030 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379379373.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:54 Heat of formation + Delta-G solvation = 2.327634 kcal Electronic energy + Delta-G solvation = -14603.149424 eV Core-core repulsion = 12380.363343 eV Total energy + Delta-G solvation = -2222.786081 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42666 -38.00351 -35.03435 -32.93214 -31.24387 -28.11061 -27.14910 -24.70392 -23.21886 -23.03563 -21.22295 -20.60117 -18.11062 -17.23436 -16.36228 -16.12889 -15.86109 -15.26245 -14.94584 -14.46840 -14.13842 -13.81981 -13.55031 -12.98202 -12.80020 -12.71079 -12.53042 -12.36691 -12.18077 -12.10536 -12.01522 -11.75870 -11.59083 -11.27970 -11.01964 -10.70435 -10.59433 -10.44185 -8.86428 -8.07057 -6.17386 1.42321 1.43881 1.53898 2.44151 2.96949 3.20906 3.38845 3.98497 4.08573 4.10415 4.33714 4.40910 4.56368 4.64431 4.75602 4.76601 4.80009 4.84046 4.91617 4.96308 5.09110 5.12785 5.18424 5.25187 5.32384 5.34456 5.44835 5.50652 5.55408 5.75499 5.80240 5.90947 6.32560 6.44811 6.80586 6.96789 7.50577 8.98699 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053062 B = 0.007177 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.556511 B = 3900.268502 C = 4127.235832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.107 4.107 3 C 0.221 3.779 4 H -0.048 1.048 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.538 5.538 14 C 0.040 3.960 15 C 0.056 3.944 16 C -0.069 4.069 17 C -0.165 4.165 18 C -0.180 4.180 19 C -0.170 4.170 20 H 0.052 0.948 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.059 0.941 27 H 0.000 1.000 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.012 0.988 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 1.748 12.582 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.146 4.146 3 C 0.114 3.886 4 H -0.031 1.031 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.262 5.262 14 C -0.108 4.108 15 C -0.072 4.072 16 C -0.107 4.107 17 C -0.184 4.184 18 C -0.217 4.217 19 C -0.207 4.207 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.019 0.981 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.049 1.603 12.421 13.163 hybrid contribution 1.104 0.251 -1.144 1.609 sum -2.945 1.853 11.278 11.802 Atomic orbital electron populations 1.21297 0.95569 0.98518 1.00969 1.21447 0.96552 0.97424 0.99145 1.19067 0.89708 0.91893 0.87964 1.03051 1.21345 1.30557 1.11801 0.90786 0.92244 1.25654 0.95348 0.95681 1.01938 1.70020 1.37161 1.23635 1.25309 0.85611 0.78806 0.78189 0.79367 1.20458 1.21080 1.19205 1.62059 1.59636 1.02551 1.01993 1.22224 0.96794 0.89908 1.01883 1.22126 0.95649 0.99371 0.90077 1.21019 0.99185 0.99513 0.90979 1.22260 0.98331 1.04971 0.92815 1.23089 1.00074 0.94569 1.03990 1.23017 1.03493 0.97639 0.96558 0.92939 0.94494 0.94583 0.91988 0.95537 0.93126 0.92222 0.98130 0.90620 0.91735 0.96983 0.91731 0.91757 0.88338 0.88902 0.88144 0.87727 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.66 9.52 71.98 0.68 -3.97 16 2 C -0.11 -5.26 5.16 30.60 0.16 -5.10 16 3 C 0.22 11.36 1.76 44.18 0.08 11.44 16 4 H -0.05 -2.82 8.14 -2.39 -0.02 -2.84 16 5 C -0.51 -27.72 6.73 25.60 0.17 -27.55 16 6 H 0.06 3.23 6.28 -2.91 -0.02 3.22 16 7 C 0.01 0.67 5.30 84.66 0.45 1.12 16 8 N -0.92 -53.50 11.30 21.45 0.24 -53.26 16 9 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 N -0.54 -23.11 3.79 -901.45 -3.42 -26.53 16 14 C 0.04 1.59 9.04 127.69 1.15 2.75 16 15 C 0.06 2.04 4.79 86.30 0.41 2.46 16 16 C -0.07 -2.00 5.52 30.60 0.17 -1.83 16 17 C -0.17 -3.97 5.74 -10.80 -0.06 -4.03 16 18 C -0.18 -3.75 10.18 30.59 0.31 -3.44 16 19 C -0.17 -3.27 10.25 30.59 0.31 -2.96 16 20 H 0.05 2.15 7.68 -2.38 -0.02 2.13 16 21 H 0.04 1.75 7.16 -2.39 -0.02 1.74 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.06 3.43 6.00 -2.39 -0.01 3.41 16 24 H 0.03 1.20 6.30 -2.39 -0.02 1.18 16 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.06 2.51 6.15 -2.39 -0.01 2.50 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.08 2.46 6.49 -2.39 -0.02 2.45 16 29 H 0.06 2.46 5.80 -2.39 -0.01 2.44 16 30 H 0.01 0.45 8.07 -2.39 -0.02 0.43 16 31 H 0.06 1.80 6.63 -2.38 -0.02 1.78 16 32 H 0.06 1.91 7.88 -2.39 -0.02 1.89 16 33 H 0.10 2.40 8.08 -2.39 -0.02 2.38 16 34 H 0.09 1.96 8.03 -2.38 -0.02 1.94 16 35 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -59.14 287.63 3.71 -55.43 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.01 Total: 9.56 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: 3.84 Total: -31.12 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -3.18 Total: -79.79 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -59.14 3.71 -55.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379379373.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.761 kcal (2) G-P(sol) polarization free energy of solvation -59.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds