Wall clock time and date at job start Thu Apr 9 2020 11:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47321 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99882 * 2 1 3 5 5 H 1.08005 * 119.99734 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00116 * 60.00349 * 4 2 1 7 7 N 1.31516 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00011 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47244 * 60.00135 * 8 6 4 10 10 H 1.48506 * 109.47128 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47486 * 299.99779 * 8 6 4 12 12 N 1.46906 * 109.46958 * 120.00119 * 2 1 3 13 13 C 1.46898 * 110.99888 * 176.04575 * 12 2 1 14 14 C 1.46902 * 110.99573 * 299.99941 * 12 2 1 15 15 C 1.53005 * 109.46590 * 169.99897 * 14 12 2 16 16 C 1.52999 * 109.46704 * 179.97438 * 15 14 12 17 17 C 1.53778 * 113.61527 * 274.13614 * 16 15 14 18 18 C 1.53957 * 87.02228 * 220.04986 * 17 16 15 19 19 C 1.53786 * 87.11232 * 25.36274 * 18 17 16 20 20 H 1.08997 * 109.47598 * 300.00150 * 1 2 3 21 21 H 1.09002 * 109.46781 * 59.99952 * 1 2 3 22 22 H 1.09000 * 109.47321 * 179.97438 * 1 2 3 23 23 H 0.96998 * 120.00296 * 180.02562 * 7 6 4 24 24 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 25 25 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 26 26 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 27 27 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 28 28 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 29 29 H 1.08995 * 109.47522 * 299.99728 * 15 14 12 30 30 H 1.09000 * 109.47130 * 60.00458 * 15 14 12 31 31 H 1.08999 * 112.85340 * 45.33485 * 16 15 14 32 32 H 1.08993 * 113.61598 * 334.56993 * 17 16 15 33 33 H 1.09006 * 113.61572 * 105.47440 * 17 16 15 34 34 H 1.09005 * 113.53833 * 270.81699 * 18 17 16 35 35 H 1.08993 * 113.67062 * 139.93151 * 18 17 16 36 36 H 1.08996 * 113.61609 * 220.09230 * 19 18 17 37 37 H 1.09001 * 113.68903 * 89.19039 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0078 9 1 1.8281 -2.5199 -4.0081 10 1 1.8270 -0.4199 -5.2204 11 1 3.8075 -1.1190 -4.0077 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5485 -0.0264 2.4211 15 6 1.8625 -0.9044 3.6341 16 6 1.3724 -0.2103 4.9065 17 6 2.3890 0.7802 5.4984 18 6 1.9743 0.2533 6.8843 19 6 1.5648 -1.0509 6.1799 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 0.7082 1.1609 -3.4844 24 1 3.9186 0.2050 1.1592 25 1 3.8207 -1.3118 2.0859 26 1 3.8029 -1.3532 0.3068 27 1 2.0518 0.9345 2.5281 28 1 0.4721 0.1324 2.3563 29 1 1.3593 -1.8653 3.5272 30 1 2.9389 -1.0631 3.6989 31 1 0.3691 0.2030 4.8036 32 1 3.4225 0.5539 5.2366 33 1 2.1282 1.8254 5.3318 34 1 1.1359 0.7945 7.3229 35 1 2.8093 0.1331 7.5745 36 1 0.6396 -1.4819 6.5625 37 1 2.3717 -1.7798 6.1041 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398632644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:51:24 Heat of formation + Delta-G solvation = -4.923363 kcal Electronic energy + Delta-G solvation = -14380.863478 eV Core-core repulsion = 12157.762970 eV Total energy + Delta-G solvation = -2223.100508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97882 -38.51919 -34.98795 -32.29036 -30.73490 -27.85828 -26.48300 -26.19884 -24.79153 -22.43515 -21.02686 -20.17882 -18.35692 -17.10098 -16.51583 -16.08077 -15.93760 -15.21642 -14.93982 -14.64605 -14.11118 -13.65793 -13.27527 -13.26053 -12.99877 -12.84646 -12.74238 -12.60730 -12.16339 -12.11166 -11.96780 -11.85940 -11.54122 -11.35283 -11.01584 -10.86366 -10.74271 -10.50578 -8.92146 -8.11143 -6.23521 1.42472 1.44745 1.52271 2.42593 3.16451 3.37403 3.79067 3.82322 3.94980 4.05447 4.25016 4.48568 4.61305 4.68607 4.73496 4.74935 4.84418 4.92078 4.93190 4.99817 5.02470 5.08134 5.12773 5.13028 5.19220 5.27831 5.36132 5.50385 5.53156 5.69580 5.73444 5.79939 6.25660 6.41225 6.76953 6.91463 7.45795 8.94920 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068311 B = 0.006035 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.793778 B = 4638.785715 C = 4804.078872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.214 3.786 3 H -0.042 1.042 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.547 5.547 13 C 0.042 3.958 14 C 0.054 3.946 15 C -0.092 4.092 16 C -0.114 4.114 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.132 4.132 20 H 0.030 0.970 21 H 0.059 0.941 22 H 0.031 0.969 23 H 0.262 0.738 24 H 0.001 0.999 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.011 0.989 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -2.093 14.965 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.107 3.893 3 H -0.025 1.025 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.271 5.271 13 C -0.107 4.107 14 C -0.074 4.074 15 C -0.129 4.129 16 C -0.133 4.133 17 C -0.180 4.180 18 C -0.171 4.171 19 C -0.169 4.169 20 H 0.048 0.952 21 H 0.078 0.922 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.020 0.980 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.803 -2.451 14.817 15.126 hybrid contribution 0.474 0.786 -1.213 1.521 sum 2.276 -1.666 13.604 13.893 Atomic orbital electron populations 1.21661 0.97331 0.99219 0.99643 1.19061 0.92704 0.89989 0.87576 1.02498 1.21426 1.31233 1.12343 0.90986 0.92185 1.25756 0.95347 0.95774 1.02020 1.70021 1.37769 1.24271 1.24126 0.85545 0.78712 0.78674 0.78297 1.19606 1.20904 1.19623 1.62111 1.10209 1.52496 1.02301 1.22203 0.88002 0.98621 1.01846 1.22167 0.99885 0.94954 0.90378 1.21480 1.00874 0.98407 0.92170 1.22562 0.99425 0.97735 0.93581 1.23034 0.99077 0.98755 0.97112 1.22815 1.01579 0.96900 0.95855 1.22914 1.01954 0.96749 0.95284 0.95150 0.92179 0.94979 0.92925 0.98023 0.90410 0.92408 0.97047 0.91774 0.91884 0.91871 0.89722 0.90467 0.92171 0.89678 0.90671 0.90989 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.14 8.76 71.98 0.63 -5.51 16 2 C 0.21 11.39 2.06 44.17 0.09 11.48 16 3 H -0.04 -2.53 8.14 -2.39 -0.02 -2.55 16 4 C -0.52 -29.53 7.93 25.60 0.20 -29.33 16 5 H 0.06 3.35 6.39 -2.91 -0.02 3.34 16 6 C 0.01 0.53 5.30 84.65 0.45 0.98 16 7 N -0.92 -54.27 11.32 21.45 0.24 -54.02 16 8 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 N -0.55 -24.41 4.62 -901.47 -4.17 -28.58 16 13 C 0.04 1.68 9.05 127.69 1.16 2.84 16 14 C 0.05 2.02 4.77 86.30 0.41 2.43 16 15 C -0.09 -2.65 4.97 30.60 0.15 -2.50 16 16 C -0.11 -2.69 3.64 -10.26 -0.04 -2.73 16 17 C -0.14 -3.06 7.65 31.18 0.24 -2.82 16 18 C -0.13 -2.32 8.09 31.18 0.25 -2.07 16 19 C -0.13 -2.50 7.65 31.13 0.24 -2.26 16 20 H 0.03 1.36 6.20 -2.39 -0.01 1.35 16 21 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 22 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.08 2.58 6.30 -2.39 -0.02 2.57 16 26 H 0.06 2.49 6.23 -2.39 -0.01 2.48 16 27 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 28 H 0.06 2.45 5.83 -2.39 -0.01 2.44 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 1.76 6.20 -2.39 -0.01 1.75 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.08 1.68 7.92 -2.39 -0.02 1.66 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -60.94 285.61 2.90 -58.05 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.01 Total: 7.72 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 3.78 Total: -29.49 kcal Atomic # 7 Polarization: -78.68 SS G_CDS: -3.93 Total: -82.61 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -60.94 2.90 -58.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398632644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.122 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds